G297493


Basic Information

Item Value
gene id G297493
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4583856 ~ 4665614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409148
GGATTATATGGTAATATAGGGGAGTGTATgcagtataaggtagtatatggtcgtatagggaagtatatggtaatataggggAGTGTATGCAGTATAAGGGAAGTATAGGTAGTAtaaaggagtgagagagagacaataacAAGACAGAGAATGACATAGTAAAtgacagtgaaagagagagagagaaagagagagagagacaatgaaGCAGACAGACCCAGTCTCAGTATCACATGGtgctttgtgtgttttgaatGCGGATGATTGGggttgtttagtttttattagctTTAACCAGCAGATAGCTGTGACTGTCATTGTGATGATGGAACAGGAGCTAGCAGACAGTCTGCCTgatacagtaacacacacactaataacacacactcacacagggcCGTAATAGTGAGCATTTGTTTAGGCCGGGAGTTCCCCCTGAGGGTGGGTGATCGTGCTGCTGGAATGCTCCTATCAGCGGCGGTGTGGGATTTAGAAGACATGGAGACACAGCAAGGGATTAGAACTCGATGTGCTTCAGAGATAAGCTGCAACTTACAGAGGATTAAGCTGTCGGCTATGAAAAGACAATCgcaaaaagcaaaaagtagGCATGGCCTTACTGTACTTAATTTTTTGCTACTATGTTTGTATGCTTGTCTAACATTACGAAAATTCACAAATTCAAAATAATATGTCAGAATTTtagtttcagtaattcagtttatttcGCACAGGAAATAGCAGAGAAAACACAAtattatatcgtcgctgtccaattaaaaaacacttatctccaaaacagcaactttacagaagagagaaaaaaaccttgtaaactttcaatgggaGTCAATGTAagtagagtttatttcaggtcattttgaagagtttctattggtccgttcatcaagaaattttggcacagtgtaagggacagtttgtctgttcaaattatgtagttaacttaaaatcgacaaaaatgtgaaaaaaaaaagtttttcattggacagcgacgatatacagtaATAGGCCAAAAGTCTTAGGACAGGAAATAGATCATGTCCTAAGACTTTTAGgcttttatatttatgatatagTAAATGCTTACTCAActttgcacccactatcaggtcttgctccaactcccataattcacagtgccttgccatgagcacactggccagatTGCCATATACAACTGTGGGCGTTCCTAAGATGTTTAACAAAAGGTAACACCACACCTGTGACTTATGGCAAGTCCTTAAATCAGAATTAAAGGTTCATATCACTTTAGAAGCATCTAAAATGAGCATCAATCTGACCATTATTCCTGGTGGTTGAGTAGCTGAGCTGGTCTGAGCTGATCTGTGAGTCTGGTGTTAGCACAAGTTTCCTGCCTGGCCTCGTTTAGGTCTGTCACTGAAAAGCTATTTTTATAAGACTACAGGAAGCCCTGATCAGCCGCAGCGGCCTGCGAATGGATGACACAGACGGAACATGCAGAGTATATATTCTACTGAGGCTACTTTAAGGTGCTGTTCAGCAGAAAAGCAGATGATCTCAGTTTTCCTCTTACTCTGAAAGCCTGCGTCAGTCAGCTCAGACAGCTTCGCTGTGTGAAATCGTGCTCAGAGCCTGGATGTGCATGTGCACCTGTTGAAGATAACATAGCATAGACATTGTAGATATAatgacatcatcatcatcatcatcattttacTGCACTTCCACTCAGTAGATATACAGTAATCGGCTTTACACACTCAACAATTCAATGAGGGGAGTAAGAGTAAACAGCATCAGATGGGTTTGCCAAGTTTTATAACAGCAATTTGATTGTAAAAAAAGGACTTAATCTGTAAgtggtgtatttttatatgtCTTATAATTTGAGTTTTGTCtgattttatgtacatttttattctattaatgcagatatacagctctggaaaaaaataagagaacacttcattttctgatttaaaatcagtttctctgactttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctctcaatttccaaacaaaattattgtcatttagagcatttatttgcagaaaatgagaaatggctaaaataacaaaaaaagatgcagagctttcagacctcaacaagttcatattcataaagtttgctgtaataatcctgatttttaatcaaagttttcatgcatcttggcatcatgttctcttcctccaccagtcttacacactgcttttgtatctgctttatgcctttactcctggtgcaaaaattcaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcgatttggtaaaatcaaagaaaattttttccagagctgtacattataaatatatgaatatggaAGTGTGCGGCTGCCCAGAGCCCACTGTCTCAGCTTGGACGTCCTCAcacccccacctccacccccTCCCTCCAACCTGCCCGTCTGCTGGCCAGGGGAATTCCTGGCAGAGTGATTTTTAACCTTAATGACTGAATCACATTGCCAGGGATTTCCAATGGCTGGTATGAAGAAAACGACCTAGACAGTGCACAATTCCCTCGCCCagacatagacacacacacacacacactcacacacctttAGACAAACCCACTGGCTCTTAATCCTCCTGGAATGCAAGTACATCCATGTGAATACTGCAAGGCGCCACCACACCCTGTCGAGCCAGTACACACATGCAAAAGCCAccttcatgcaaatatatatatattatatatgtatgtgtgtgtgtgtgtgtgtgtgaacacacCCAGACACTTTTACTCACACAAGATTGTGACTGTACACGTTAAATACACCACTGCCGAGACCTGCAGGATTTTAAAGTAGAAATGAACAATGCTGGGAaataaagtactgtatttttggcactttaaggtgcacttaaattctttaattttcctaaaatcatcagtgcgcctcataatccgctgctccttatgtataaattctaccagtcaggtattaaggagcagtaaagccactccgctgaagtattagcattagctgctaaccacgctaagcgctagctctttagctatccagaggtgagtattattataggactgtagcctgctgctaaccctggatagcactgctggagcagcattagcattagcctctaaccatgctgagtgctagctctttcaccgttcagtgGCAagcatattggactgtagtctgcgtgtttactttGTTAACACAAGCTACGTATGTTTAGTTTTCTCCAGGTTTTCTCCAGTaactgctaactgctagcagttagccgctaattcTAATGCTACAGCTGTAGTGTAAATCTGTTAATCTCAGTTtactgtagatttacatccagctttcgtttgacttgtctgactcgtctgaaatgttttttgtttaagtattacagttttgtttacttaacttagcttcaCTGATactgaatttagaaggaaaacatggcgacgccACTGTTCATACTACTAGTTATTAggtactagtgttgcataaaatgaaccttataatccgatgtgctttgtgtatgaaaacagaccagaaaatagacgtttattaataGCGCATCTTATACAAACAGCCCTAACTCAAAATAGATGGATTttcacaggactccattaggaacatCTACAACTCTTTACATGCAGAGATGCCTGGCATgtagctcaaaaaatatgaccCAGAGAGTTTCCCATATCTgcctacatttttattaatttattgggTGCAACTATTTGTGTATGTGAACACTATGTACATTAtgaaaagttttagaacacccctatagtttatcaatcaattaactgcagtgctgtatggcccagaaacatctgtttttttatttttttcatcttgacataatcaatgactttattattgcattaatattttcacctgtcagactaactcttattcttctcttcactgctgaaaatgAGACTCAGTCCAATCAGGTTAAGCTGAGCTACaggctaaagctgtttccaTTAATAAGGAATATAATTTCCCCAGTCCCAGTGAATCCCTATATACTATAAGCCTTTGATGTTAAAAGACATTAACTTATGTAGACAGTGTTTTAAAGGCTTGTTCTAACAGGCATTAGGATAACACTCGCTATGGGCAAAACATCAGCATGATGATATGCGTCTTCATTAATGTTTCTGTATGTTTCTGTCTGTTGTCATGGGAGGCTTACTGTATGTTGGTGTCACTGAGCcttataaataatgaataattaaagaaatgtataatataatatttgattatataGCATTTCTattcatatttttactttttaacattatttaaatctAGCATTGGGTTTGTTTTTGAAGGTGATATGTTTTAAgcagaacaaaaaaatgcaagTGATTTGAGAGtcttacattttatattagatttttatattagatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409148 True 4527 lncRNA 0.38 2 4583856 4665614

Neighbor

gene id symbol gene type direction distance location
LOC103021497 NA coding upstream 75371 4486904 ~ 4508485 (+)
epor NA coding upstream 169165 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 190990 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 220252 4356987 ~ 4363604 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding upstream 237259 4323111 ~ 4346597 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 43850 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 61073 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 69054 4734668 ~ 4770755 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding downstream 108029 4773643 ~ 4789683 (+)
gadd45gip1 NA coding downstream 405790 5071404 ~ 5073183 (+)
G297551 NA non-coding upstream 53790 4529089 ~ 4530066 (+)
G297549 NA non-coding upstream 69050 4514266 ~ 4514806 (+)
G297544 NA non-coding upstream 102565 4480885 ~ 4481291 (+)
LOC111191048 NA non-coding upstream 106087 4458455 ~ 4477769 (+)
LOC111191027 NA non-coding upstream 140762 4440344 ~ 4443094 (+)
G297571 NA non-coding downstream 52165 4717779 ~ 4788076 (+)
G297580 NA non-coding downstream 130380 4795994 ~ 4802293 (+)
LOC111191040 NA non-coding downstream 136688 4802302 ~ 4806391 (+)
G297604 NA non-coding downstream 373161 5038775 ~ 5039047 (+)
G297614 NA non-coding downstream 396702 5062316 ~ 5062662 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 149785 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 284409 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 943242 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1435253 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3221921 1359112 ~ 1361935 (+)
LOC103033323 NA other downstream 1036898 5702512 ~ 5711874 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025130 dre-mir-23a-2 non-coding NC_007114.7 CM002887.2 13406226 ~ 13406323 (+)