G297516


Basic Information

Item Value
gene id G297516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4352653 ~ 4355964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409188
AAATTTATTGAAATTAAATGACCCAAtcattacattatataaaatctaaatctacAACAAAAGTCCTGAAAACAAATAGAATTACACATCATTTAAGGATAGATACTGATaagcaaacaaaccaaccaGCTACTGATTCAGAAATAATAGTCTACACATAATCTGTTTATACACATCACGCAACATTTAACACAAGATAACTGGGAGCATAAGGATGGCTAACTAGGGACTGAACAAAATGTCCCACATTTCTATATTCCCAGGAAAGACCAAATGATCTCAGATGATAttatgaatttaaaataaagattcttCTTAGATATCAGGGCATCAGACGTCTCTGCCATCCTTAACTTCTGACCATAAAAGAGGAGCTACTGATTGGCTGCTTCACAAGCATCAATCCAGTCGCTGTACACGTCCACCGGTTCAGAGAGATagGTTATGGGTGTCTGGAACTCCTCCAAGCACACAGTACAAGATATAATCCCTGTGTTTCGGCTTCTTTCcTTTTCACATCACAGGACTTCTCGTGGTTACAGAAGGGGCAGGTGAACTGGGTGTCCAGATTCCccgtcattttttttttaggaggaGGCTTTCTCTTCGACTTTCTGCGAGCCATCTTTACTCTATCAGTCGTGAACTCTTAATCCAAACAGCAGAGCTCCGCTACAGAACCACAGCAGCGAGTAAACAGCCCGACACACACCGAGGAATGCGTACTTATGACGGCGAACAGTAGCTCGGGCGGCGCGGTACTGCCACCAGGCGGGGAGACAGAGTTAAAACTTGTGTTAGTGATAGAAAAGaatgtaaaaatgctgttttccaTCTACAATTTACAGAAAAGAAATCTCTAATATTCGActagcctgtgtgtaatattttatattgacctttttatttcatgaaCCAtacctaaacagtaaaaacattgttaaaaagtGTCCTATAACATTATCACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409188 True 969 lncRNA 0.39 4 4352653 4355964

Neighbor

gene id symbol gene type direction distance location
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding upstream 6056 4323111 ~ 4346597 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding upstream 193191 4080149 ~ 4159462 (+)
LOC103046751 LOC108432062 coding upstream 527013 3776523 ~ 3825640 (+)
LOC103025262 LOC108432064,LOC108256459 coding upstream 586166 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 701318 3645713 ~ 3651335 (+)
tmem205 tmem205 coding downstream 1023 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 11754 4367718 ~ 4392866 (+)
epor NA coding downstream 45676 4401640 ~ 4414691 (+)
LOC103021497 NA coding downstream 130940 4486904 ~ 4508485 (+)
LOC111191035 LOC108412261,LOC108278278 coding downstream 155445 4511409 ~ 4598805 (+)
G297497 NA non-coding upstream 76830 4215295 ~ 4275823 (+)
G297405 NA non-coding upstream 186091 4127521 ~ 4166562 (+)
G297394 NA non-coding upstream 218789 4011777 ~ 4133864 (+)
G297529 NA non-coding downstream 62012 4417976 ~ 4418769 (+)
G297530 NA non-coding downstream 75369 4431333 ~ 4435857 (+)
G297531 NA non-coding downstream 80102 4436066 ~ 4436423 (+)
LOC111191027 NA non-coding downstream 84380 4440344 ~ 4443094 (+)
LOC111191048 NA non-coding downstream 102491 4458455 ~ 4477769 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 53206 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 712039 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1204050 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2990718 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 3062233 1287516 ~ 1290420 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 64033 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 294679 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1346548 5702512 ~ 5711874 (+)

Expression


Co-expression Network