G297529


Basic Information

Item Value
gene id G297529
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4417976 ~ 4418769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409209
ttataacattttagatgatgtatgtgttttatacagtaattaGTGTTACCTTAAGACATTCAGCTCTCCTGGCACCCTGAAACGATATAGGAAGGCTCTGAATCTGACTCTGAGTGAAATAAAGCACTTTAACTGCTAATTCTGAAGCTGCAGTCAGAGCTGAGAGTAACAGTAGCGGCCTACTAAAGCTTCGGTCTCCAGTCACGAGTGCGCCGCTCTCCGGGGCGCACAGCCCGGTACCCGGCTGGGTACACACCCCGGTGATACTGCCGGAGCTGAACTGACTCAACACCAGCCCCAGAATATCCACCATATCTGCTCTAAATATCCTCACAACCAATAAAACACAGCTAGCTTCATCTTCTGAATTCTTTAAAAGCGTGTTTCCAGCGATTGGAGTCTGGTGAATTAAACAAGAAAACTAGCTATAACAGATCAACtaaactgactgactgacttttAGCATTCAATGCTAACTAAAAACTACATCACTTGCTTTTCCCGCGCCCGTCTCAACGCCCACCCCCTCTCACTCTGATCTACGATTGGCCAGTTGCTGTTCCAGCAAAAGCTTTTTTCTGCTCTGATTGGACAATCCACCTGTCTGTCAAATAAATACGCCTGTATATGGCTCTGGGAGAGCCTACCCACTTTACACAGTATTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409209 True 668 lncRNA 0.46 2 4417976 4418769

Neighbor

gene id symbol gene type direction distance location
epor NA coding upstream 3285 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 25110 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 54372 4356987 ~ 4363604 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding upstream 71379 4323111 ~ 4346597 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding upstream 258514 4080149 ~ 4159462 (+)
LOC103021497 NA coding downstream 68135 4486904 ~ 4508485 (+)
LOC111191035 LOC108412261,LOC108278278 coding downstream 92640 4511409 ~ 4598805 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 290695 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 307918 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 315899 4734668 ~ 4770755 (+)
G297516 NA non-coding upstream 62012 4352653 ~ 4355964 (+)
G297497 NA non-coding upstream 142153 4215295 ~ 4275823 (+)
G297405 NA non-coding upstream 251414 4127521 ~ 4166562 (+)
G297407 NA non-coding upstream 326676 4090911 ~ 4091300 (+)
G297398 NA non-coding upstream 392616 4025049 ~ 4025360 (+)
G297530 NA non-coding downstream 12564 4431333 ~ 4435857 (+)
G297531 NA non-coding downstream 17297 4436066 ~ 4436423 (+)
LOC111191027 NA non-coding downstream 21575 4440344 ~ 4443094 (+)
LOC111191048 NA non-coding downstream 39686 4458455 ~ 4477769 (+)
G297544 NA non-coding downstream 62116 4480885 ~ 4481291 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 118529 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 777362 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1269373 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3056041 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 3127556 1287516 ~ 1290420 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1228 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 231874 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1283743 5702512 ~ 5711874 (+)

Expression


Co-expression Network