LOC111191048


Basic Information

Item Value
gene id LOC111191048
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4458455 ~ 4477769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409220
gagagaagacctAATCTACACTCTCCGGGATCTGCAGGCAGGGACAGCAGAGGATCTGAAGATGGATTGGCGTAAATTACTGAAAGCGTTGATTTTTTTGGCATATGTCATTGTCATTATGACTGGAGTTGGTCTGATATCGTTGGGGGCCTGGTCGAATGTGGAAAAGGACCCCTGTAAAGTGATCTGTGAGGAAGTGACAAATACGACGAAAGAGCTGAATCTTTTGCTGAAGGGGGGCTACCTACCGATCGCTCTGGGAGTGGTTCTGACTGTGATTGGCCTCAGGGGCTGCTTGAAAACCCTGTGTAAATTATTGGCTAAAAAATTCTTTTCTTCCCTTTCTTGCTGCCAGTCTTCCTAAGtctatttattaaacacattccTGTGGAAGAGCTACAAATTAATGCAAATGTCCGCCCCCACAAACTCTTGTGGCTTTTTCCTTACAGgacgttttttttaaagaaaacgtcaaaaatgaaaaatgtcttgaaaactagagttttatttgacaaaatcatataacgcaaacttaacagactggtttctctcacacattgattctataagaaatagaaataaaaataggaataaaaaataaaagtaaaacttttctaggtcttatatagtgcaaacaataagtgcaaaccacaaccagtcatattaagcctagggtttgtgttttttctcctaaatctcttgtaatttaactctgcataaccataaccagtcatattaagactatgGTcaaagtgaaacagagacagaacatgtttttaaatacagtacagagctaagggattagtacacctgCCTATGAATCAGTCatgtgtaggatttacttacagtatttcagacatcccaagttgcaaaagttgatttcagggaggttacacacaccaaaggataacggaacttttcttttatattaattataattttttttaattaaattgagAGTATTcagagtttaaatgagttttatctttttttctttttggaaggccctgcctctgctttcctttccttttttttggaaaaaaaatcctttatttgacaaaagttgacagttacaatatcacaaaaaattgcacaacatcaaaaacatttcatatcatattacaataattattaatattgcctccgccatgatctgctttctctcactcactgaacaaatcccgtccgggaggggggaaaaacactgcccgcccacactaaaaactgattggctgtctcacagactctttgaagagaacaggccaatcagaacactctgttttctctctctccttcccacactcgttctgaattccgggagattaaatgtgactcgcgggcatcagggagccactaccgaaatacggtagactcccgcagcttcagggagactcgGTTTGTCTGGTATTTACATATAGTTTgtatcttgttggtcactctgttaccatttattgtttccactggagccaaaatgcagccagacatacaacttaaaagtagcagaagcttcttctatacaaatacctgaattttcctcttctgctgagagctgctctcactgctcagccatcaTACTCACTGCTAtcactactgtgttgccagatccctctaaaaatgtccacactaaactgtcttttttttccgcgagacaggtttaagcctgatGAGAAATATTGCCACGTTTTAATATCatgagatctcgtcacacccctagaaATCACCCattaaaattgcattaaattacattacattacattacattacgcttttgtccaaagcgacttacaatagtgaagtacagaaATAATAGAAGGTAAAGCAACTttatatagggcctaaaggaggttaAAGAGAAATAGTGGCATAGAGGAGTGCAGGAGGTtaaaaggaaatgaggttagaagtagtaaCTGTGTTAGAGGTGAATATCAACACAAGGAACCACAATCATCTGTCATTTAGTTTTcacagtggtgtgcagtaaatATAGTGGGTACACCCTCAGCAACACCCacg
>XR_002649335.1
CCatcagcgagagagagagagagcgagagagagagagagagagagagagagagagagagagagagagaagacctAATCTACACTCTCCGGGATCTGCAGGCAGGGACAGCAGAGGATCTGAAGATGGATTGGCGTAAATTACTGAAAGCGTTGATTTTTTTGGCATATGTCATTGTCATTATGACTGGAGTTGGTCTGATATCGTTGGGGGCCTGGTCGAATGTGGAAAAGGACCCCTGTAAAGTGATCTGTGAGGAAGTGACAAATACGACGAAAGAGCTGAATCTTTTGCTGAAGGGGGGCTACCTACCGATCGCTCTGGGAGTGGTTCTGACTGTGATTGGCCTCAGGGGCTGCTTGAAAACCCTGTGTAAATTATTGGCTAAAAAATTCTTTTCTTCCCTTTCTTGCTGCCAGTCTTCCTAAGtctatttattaaacacattccTGTGGAAGAGCTACAAATTAA
>XR_002649336.1
ACACTCTCAGGGATCTGCAGGCAGGGACAGCAGAGGATCTGAAGATGGATTGGCGTAAATTACTGAAAGCGTTGATTTTTTTGGCATATGTCATTGTCATTATGACTGGAGTTGGTCTGATATCGTTGGGGGCCTGGTCGAATGTGGAAAAGGACCCCTGTAAAGTGATCTGTGAGGAAGTGACAAATACGACGAAAGAGCTGAATCTTTTGCTGAAGGGGGGCTACCTACCGATCGCTCTGGGAGTGGTTCTGACTGTGATTGGCCTCAGGGGCTGCTTGAAAACCCTGTGTAAATTATTGGCTAAAAAATTCTTTTCTTCCCTTTCTTGCTGCCAGTCTTCCTAAGtctatttattaaacacattccTGTGGAAGAGCTACAAATTAA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0050896 response to stimulus biological_process
GO:0065007 biological regulation biological_process
GO:0072376 protein activation cascade biological_process
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0050789 regulation of biological process biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU409220 True 2019 lncRNA 0.39 4 4472100 4477769
XR_002649335.1 False 469 lncRNA 0.46 3 4472038 4475326
XR_002649336.1 False 390 lncRNA 0.45 3 4458455 4475326

Neighbor

gene id symbol gene type direction distance location
epor NA coding upstream 43764 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 65589 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 94851 4356987 ~ 4363604 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding upstream 111858 4323111 ~ 4346597 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding upstream 298993 4080149 ~ 4159462 (+)
LOC103021497 NA coding downstream 9135 4486904 ~ 4508485 (+)
LOC111191035 LOC108412261,LOC108278278 coding downstream 33640 4511409 ~ 4598805 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 231695 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 248918 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 256899 4734668 ~ 4770755 (+)
LOC111191027 NA non-coding upstream 15361 4440344 ~ 4443094 (+)
G297531 NA non-coding upstream 22032 4436066 ~ 4436423 (+)
G297530 NA non-coding upstream 22598 4431333 ~ 4435857 (+)
G297529 NA non-coding upstream 39686 4417976 ~ 4418769 (+)
G297516 NA non-coding upstream 102491 4352653 ~ 4355964 (+)
G297544 NA non-coding downstream 3116 4480885 ~ 4481291 (+)
G297549 NA non-coding downstream 36497 4514266 ~ 4514806 (+)
G297551 NA non-coding downstream 51320 4529089 ~ 4530066 (+)
G297493 NA non-coding downstream 106087 4583856 ~ 4665614 (+)
G297492 NA non-coding downstream 121920 4599689 ~ 4600615 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 24384 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 159008 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 817841 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1309852 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3096520 1359112 ~ 1361935 (+)
LOC111191039 NA other downstream 172874 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1224743 5702512 ~ 5711874 (+)

Expression


Co-expression Network