G297544


Basic Information

Item Value
gene id G297544
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4480885 ~ 4481291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409228
agagagtgcgcatttctagcgccgaaaaacagggcaaaagagtctaaaagcagagagggtgcgcatttctagcacagaaaaatggggcaaagagtctaaaagcagagagggtgcgcatttctagcgcagaaaaatggggcaaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacggggcaaaagagtctaaaagcagagagggtgcgcatttctagcacagaaaaatggggcaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409228 True 250 lncRNA 0.48 2 4480885 4481291

Neighbor

gene id symbol gene type direction distance location
epor NA coding upstream 66194 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 88019 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 117281 4356987 ~ 4363604 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding upstream 134288 4323111 ~ 4346597 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding upstream 321423 4080149 ~ 4159462 (+)
LOC103021497 NA coding downstream 5613 4486904 ~ 4508485 (+)
LOC111191035 LOC108412261,LOC108278278 coding downstream 30118 4511409 ~ 4598805 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 228173 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 245396 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 253377 4734668 ~ 4770755 (+)
LOC111191048 NA non-coding upstream 3116 4458455 ~ 4477769 (+)
LOC111191027 NA non-coding upstream 37791 4440344 ~ 4443094 (+)
G297531 NA non-coding upstream 44462 4436066 ~ 4436423 (+)
G297530 NA non-coding upstream 45028 4431333 ~ 4435857 (+)
G297529 NA non-coding upstream 62116 4417976 ~ 4418769 (+)
G297549 NA non-coding downstream 32975 4514266 ~ 4514806 (+)
G297551 NA non-coding downstream 47798 4529089 ~ 4530066 (+)
G297493 NA non-coding downstream 102565 4583856 ~ 4665614 (+)
G297492 NA non-coding downstream 118398 4599689 ~ 4600615 (+)
G297490 NA non-coding downstream 120058 4601349 ~ 4605869 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 46814 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 181438 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 840271 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1332282 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3118950 1359112 ~ 1361935 (+)
LOC111191039 NA other downstream 169352 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1221221 5702512 ~ 5711874 (+)

Expression


Co-expression Network