LOC111191039


Basic Information

Item Value
gene id LOC111191039
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4650643 ~ 4675621 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409247
tcgCACGCTCACTCACTCTCGCGCACTCGCACACTCCCTCTAACCCTGTCTGGCTCCACACACTCCagactctctcacactcacactctctctctctctcactttctgtctctctctcttccatctttctatctctcttctctcacacttctctcacacaaaaacacatgctGTCTGGGGCgcgagagacacacacagagaaggagagagagagagagagactgccgGCCACTtcctgcgaaagagagagaaaagatagaaagagagagaaagacttaCTGCAAAgcaaagcttgtttttttttaggatccACTCAGAAAAAAGATACGCAGAAGATGAACAgaagatgaaaaagaaagagagagagacatcaaacgaaaaatggaaaaaagtcaAGAAAGTTGGAGTGTGGGTGCTGGTCTCTCGCTCTCTACAGTCTCTGGGTCGGGCTGGTCTCCCGTGCCTGCTGTGCTGATAATCAGTGTCTGTTTCCAGCTGGCTCAGTTCAGCAGGAACAGGGGCCTGGTGATGCCTCTTACCACCACAGCTAAacatctgaacacacacacacagaggagccCACCGGACACACACTCCAGATCACTGccctgagaaaaaaacaagaaattatACATTAGATTATGTGAGTATAAATATAATAGCACTCTTTTTGTTCtcattctaaatattttttttatttattaataaattctattattttatgcatgtatttgtatttattaattg
>TU409248
tcgCACGCTCACTCACTCTCGCGCACTCGCACACTCCCTCTAACCCTGTCTGGCTCCACACACTCCagactctctcacactcacactctctctctctctctctctctctctctctctctcactttctgtctctctctcttccatctttctatctctcttctctcacacttctctcacacaaaaacacatgctGTCTGGGGCgcgagagacacacacagagaaggagagagagagagagagactgccgGCCACTtcctgcgaaagagagagaaaagatagaaagagagagaaagacttaCTGCAAAgcaaagcttgtttttttttaggatccACTCAGAAAAAAGATACGCAGAAGATGAACAgaagatgaaaaagaaagagagagagacatcaaacgaaaaatggaaaaaagtcaAGAAAGTTGGAGTGTGGGTGCTGGTCTCTCGCTCTCTACAGTCTCTGGGTCGGGCTGGTCTCCCGTGCCTGCTGTGCTGATAATCAGTGTCTGTTTCCAGCTGGCTCAGTTCAGCAGGAACAGGGGCCTGGTGATGCCTCTTACCACCACAGCTAAacatctgaacacacacacacagaggagccCACCGGACACACACTCCAGATCACTGccctgagaaaaaaacaagaaattatACATTAGATTATGTGAGTATAAATATAATAGCACTCTTTTTGTTCtcattctaaatattttttttatttattaataaattctattattttatgcatgtatttgtatttattaattg
>TU409249
tcgCACGCTCACTCACTCTCGCGCACTCGCACACTCCCTCTAACCCTGTCTGGCTCCACACACTCCagactctctcacactcacactctctctctctctctctctctctctctctctctcactttctgtctctctctcttccatctttctatctctcttctctcacacttctctcacacaaaaacacatgctGTCTGGGGCgcgagagacacacacagagaaggagagagagagagagagactgccgGCCACTtcctgcgaaagagagagaaaagatagaaagagagagaaagacttaCTGCAAAgcaaaaaagaaagagagagagacatcaaacgaaaaatggaaaaaagtcaAGAAAGTTGGAGTGTGGGTGCTGGTCTCTCGCTCTCTACAGTCTCTGGGTCGGGCTGGTCTCCCGTGCCTGCTGTGCTGATAATCAGTGTCTGTTTCCAGCTGGCTCAGTTCAGCAGGAACAGGGGCCTGGTGATGCCTCTTACCACCACAGCTAAacatctgaacacacacacacagaggagccCACCGGACACACACTCCAGATCACTGccctgagaaaaaaacaagaaattatACATTAGATTATGTGAGTATAAATATAATAGCACTCTTTTTGTTCtcattctaaatattttttttatttattaataaattctattattttatgcatgtatttgtatttattaattg
>XR_002649327.1
CTtcctgcgaaagagagagaaaagatagaaagagagagaaagacttaCTGCAAAgcaaagcttgtttttttttaggatccACTCAGAAAAAAGATACGCAGAAGATGAACAgaagatgaaaaagaaagagagagagacatcaaacgaaaaatggaaaaaagtcaAGAAAGTTGGAGTGTGGGTGCTGGTCTCTCGCTCTCTACAGTCTCTGGGTCGGGCTGGTCTCCCGTGCCTGCTGTGCTGATAATCAGTGTCTGTTTCCAGCTGGCTCAGTTCAGCAGGAACAGGGGCCTGGTGATGCCTCTTACCACCACAGCTAAacatctgaacacacacacacagaggagccCACCGGACACACACTCCAGATCACTGccctgagaaaaaaacaagaaattatACATTAGATTATGTGAGTATAAATATAATAGCACTCTTTTTGTTCtcattctaaatattttttttatttattaataaattctattattttatgcatgtatttgtatttattaattgacaagtgtttttttgtgcatgcTTGTATGTTACAGTTGCTGTATTTTGTACAtgtgaaacaaataaataaacaaacaaataaataaataaataaatacacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409247 False 747 lncRNA 0.44 3 4650643 4675519
TU409248 True 767 lncRNA 0.44 2 4650643 4675519
TU409249 False 706 TUCP 0.44 3 4650643 4675519
XR_002649327.1 False 618 lncRNA 0.37 2 4650894 4675621

Neighbor

gene id symbol gene type direction distance location
LOC111191035 LOC108412261,LOC108278278 coding upstream 51838 4511409 ~ 4598805 (+)
LOC103021497 NA coding upstream 142158 4486904 ~ 4508485 (+)
epor NA coding upstream 235952 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 257777 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 287039 4356987 ~ 4363604 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 33843 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 51066 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 59047 4734668 ~ 4770755 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding downstream 98022 4773643 ~ 4789683 (+)
gadd45gip1 NA coding downstream 395783 5071404 ~ 5073183 (+)
G297490 NA non-coding upstream 44774 4601349 ~ 4605869 (+)
G297492 NA non-coding upstream 50028 4599689 ~ 4600615 (+)
G297551 NA non-coding upstream 120577 4529089 ~ 4530066 (+)
G297549 NA non-coding upstream 135837 4514266 ~ 4514806 (+)
G297544 NA non-coding upstream 169352 4480885 ~ 4481291 (+)
G297571 NA non-coding downstream 42158 4717779 ~ 4788076 (+)
G297580 NA non-coding downstream 120373 4795994 ~ 4802293 (+)
LOC111191040 NA non-coding downstream 126681 4802302 ~ 4806391 (+)
G297604 NA non-coding downstream 363154 5038775 ~ 5039047 (+)
G297614 NA non-coding downstream 386695 5062316 ~ 5062662 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 216572 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 351196 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1010029 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1502040 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3288708 1359112 ~ 1361935 (+)
LOC103033323 NA other downstream 1026891 5702512 ~ 5711874 (+)

Expression


Co-expression Network