G297561


Basic Information

Item Value
gene id G297561
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4654334 ~ 4658649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409250
ggggtgtacagtgtgtgtttattgaaaatgtgttttgatatatgtttttcacaaaaaaatgagccaatgccaatgagtttgagttagaaaaaatatattttttgtatcatttgatgaaaaatgaaaacgggtcccacagacccgaacacctcacaagggttaaaatatttaaataaatttgggtttgtttgtgttttagacaAAATTATTCATTTTGACTGAGAAACTGAACAATTTCCACATAAATGAGCCTATGCACATGTTTTCTGGTACTAAATCGTACATtgcattattatatttgtttattaataattatcatTTCGACACTCATGCTCTGAAGGAACAGACAAGCtttcaaaatattaataattataattaataagaTTAGTAAACCACCAACTATCTAGTAACTTCGAGGAccagggctgggcgatatgagtATTCAATATCACATCTtcatagatttaaaaataaaaatgtgatatatgatacaatataatgAAACAATACTGAAGATAATGATAAAGGTATTGTTGCAATCTTGTTGTACATTAGgtatataaatagtaaatatttaattgcatCATTGCATTTacgtaaaacacattttatttaaataggcatttttgttttccaaattccttcctttctttattTAGAGGTTAAATGCATTgttattaaatgcaacttataTTATGTGAGTCTATGTGAGAATAATCAATATTTATGATAAATTACTCAGCCATAGTAACTACTACACTTATTATTCCTTAATTCCCTAATTAATATCAAGCTAATGTGCAAGCTAGCTTTCATAACAGAACATTCCAGCTTATTTtagacttaaataaataaatgaataaatacaaatcctCTAAAAGCAGCTACAACAGAAGTGAGCAGGCAGGTGCAGAAGCGACCGGCCATCGGCTTCTATTATTAGGTCGTTTCAACTCAGCACATTTTCAGTTCTTTTATTAAGTACAGGAAACGTCAGACCTGTTCTATTCTCTCTGTGGTAATCAGACGTATATCTGTTCACTGCAGATACATAACTATAAAAACCTAGATATCAGTTTAACACAGTTTTAAAGAAGTAATGCTAATGTAAAGCCTTAAAAAGTGTCataaaaatactattaaatatattgaaatTAATACGCAATGGtcaaatatgataaaaatgaagaaaaaacaaatacattaattaaatcatttttatatcTAAATTTTAGTGACCACAACCTGAACTAGACAAACTCCACTGTGGACCTACTTACACCATGAAAgtagaaaaacatataaaacattgttttatacaATCTCAAATTAATGGTGCAATAAGtcattttaaaagtgaaaaaacacagttaaaaattGAAATTATCCACTGTTTTATAGATGCTTTCAGACAAACCTTTCTGCCTACCAATAGAAATTTtggtaaaattgtgttttctttttttctactttcttaatatttattttttttaattttccttgAATTTTATATTTTGCCATTACAAATAATGTTCTTcgtatttctatatttctatttgtgAACTTGTATTAGAGGGTAATTGGTGTGTATAGCAGTGTGTTATGCAGAGGAGTGTATTGAGAGCATGCTGAGGAAAGTCTAAGGgctaaaatgtgtgtgttttatctgtgtgcCCAAATACAGATTGTTAGATCTTAGCTGAATGGGTTTAAAAACCAAAGATCAGGCAACCCGTGGGGGTCGCATTGAGGAGAAAAGCCCATTGAGGTGATTATTCatctcatattgctctcattaagagcattagagagagagaaaaagagagagatacagagagagagagagagagagagatgaataagAAGGTGGGGTCTCTGGTCTCAGGCCTGTGGACTGGTGTTGGACAACTGGTGGTGGACTGGGACAGGGACCAGGAAACAGTGTGCTAGTGGAAcaagtgcagtgtgtgtgtgtgcgtgtgtgtgtgtgccactgACGCCCCTTTGCCATTATGATGTGCCGAAAGTCTACAGCTAAAGGGCTTGGGTTGcaaacacatagacacacacttactaacacacacacacatacacacacacacacacacacacactctctctcacacactcacacgcaagacaagcctgtcacaataacgtTTTCATTTAAAAGATACTGTCCCAGAAAAAATGCGATCATTGATATTActgtcatttaaaaacattattacacccctgatataataataataataataataataatataatagcataattatattatatacacccCCTTTAAAGAGTAATGATAATATATTAGGAATAATCAGACATTAAAATGGGAATATAAatttctttatataaaatattctaaataacgAAAACAAATGTGACATACTGTCTCATTTATTCTCTTGTAGCTGAATACAATTAAAATCTCAAAACAGaatttagggtagtatagggagtaaagagtagtataggaaatatagggtagtatagggtagtatagagagtataggtaatatagagtactatagagagtatagggtagtatagGTAatattgggtagtatagggagtaaagagtagtataggaaatataggatagtatagagtagtgtagagagtatag
>TU409251
TGTATATACTAAACTATTTATGTACTATTTATGCTAATATATTAGcattatatagcaaatatattgttttaaagatCAATGACCTGAATATTCCGACATTTACATTGAAATATTACCTTTTTTCGTagaataaatactctaaataaataaaaatatatattaaatataaccaTTACTTTTACACAAAGTGAACAGATTCTTCttcaagtaaaaataatgagtaataTTGATTTTACTGAagatataaagtaaatataatgtaattagtGTGATGATTTTTAGCCAATTATCTTCAGTCAGATCAAAGcagtaaatgaataaacagggtTTGGGAcggtgtgtgtgtactgtaaacAGGCTTCTGTGCGAgtaggtcacacacacacacacacacacacacacacacacaccctagcacagacagagagagaggagaggagtcTGGAAAGAGTGTGGCGAGGAGAACCCAGCTGTTTcaacactgaacacactgaacacactgaacacactgctgctgctgctgctggaggaacCCTGCAGGGAGAGTGTCACTGTCTGAGAGACAGCCATCctacatacacacgcacacacacactctctctcacacactcacacgcaagacaagcctgtcacaataacgtTTTCATTTAAAAGATACTGTCCCAGAAAAAATGCGATCATTGATATTActgtcatttaaaaacattattacacccctgatataataataataataataataataatataatagcataattatattatatacacccCCTTTAAAGAGTAATGATAATATATTAGGAATAATCAGACATTAAAATGGGAATATAAatttctttatataaaatattctaaataacgAAAACAAATGTGACATACTGTCTCATTTATTCTCTTGTAGCTGAATACAATTAAAATCTCAAAACAGaatttagggtagtatagggagtaaagagtagtataggaaatatagggtagtatagggtagtatagagagtataggtaatatagagtactatagagagtatagggtagtatagGTAatattgggtagtatagggagtaaagagtagtataggaaatataggatagtatagagtagtgtagagagtatag

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409250 True 2638 lncRNA 0.32 4 4654334 4658649
TU409251 False 1119 lncRNA 0.33 3 4657310 4658649

Neighbor

gene id symbol gene type direction distance location
LOC111191035 LOC108412261,LOC108278278 coding upstream 55529 4511409 ~ 4598805 (+)
LOC103021497 NA coding upstream 145849 4486904 ~ 4508485 (+)
epor NA coding upstream 239643 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 261468 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 290730 4356987 ~ 4363604 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 50815 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 68038 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 76019 4734668 ~ 4770755 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding downstream 114994 4773643 ~ 4789683 (+)
gadd45gip1 NA coding downstream 412755 5071404 ~ 5073183 (+)
G297490 NA non-coding upstream 48465 4601349 ~ 4605869 (+)
G297492 NA non-coding upstream 53719 4599689 ~ 4600615 (+)
G297551 NA non-coding upstream 124268 4529089 ~ 4530066 (+)
G297549 NA non-coding upstream 139528 4514266 ~ 4514806 (+)
G297544 NA non-coding upstream 173043 4480885 ~ 4481291 (+)
G297571 NA non-coding downstream 59130 4717779 ~ 4788076 (+)
G297580 NA non-coding downstream 137345 4795994 ~ 4802293 (+)
LOC111191040 NA non-coding downstream 143653 4802302 ~ 4806391 (+)
G297604 NA non-coding downstream 380126 5038775 ~ 5039047 (+)
G297614 NA non-coding downstream 403667 5062316 ~ 5062662 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 220263 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 354887 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1013720 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1505731 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3292399 1359112 ~ 1361935 (+)
LOC103033323 NA other downstream 1043863 5702512 ~ 5711874 (+)

Expression


Co-expression Network