LOC111191040


Basic Information

Item Value
gene id LOC111191040
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4802302 ~ 4806391 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409281
GTTTCTTCTGCCTGAGCTTCCTGCTTCTGTTTGTGTATGGTGTGGTAGAGTGATTTGCCACAAGGATACTTCAGGGACACTTCCAGACATGACATCCCCCTCCTAGAAGAGGCTCCTGCTGGCTCCTAGAAGAGGACCCACTTAGCAGGACCTATAGAAACTTTCAACAAGGCTAGAAGAGGAGGACAGGACCTAGTCGTGAAAGTTTCTGGACGCTTCCTCAGCCTGGAGTCAGCATCAACCTACTCAACGCAGTGGTGAATTTATCAGCTCTTACACTAGATGTCGCCATTCTCCTGCTGGCCGGGTTTGGCCGTTCTCTTTCCCCACCCTGACCCTGTCCTCCTGTAGGGGTCTGGAGCTCGCAACTTCTCACCTCACACTCTTATTATTAACAGCATTATCAGTTTAGCAGTTTACCTCCGAACAAGAGCAATAgagataaaataatttaaatataaataagttttaaaagcacaaaaacactCAGTACCCAAGTGTGCTACATTGTGACAGACCTTTCGCACCAGTGTCATGCTCGCCTTtaagcctgtgtgtgtttttaggcgGGCAGAGTCTGGCAGAGATAGTGTGAGAGGTAGCTGGCGTGCCCTGCCTGAAGATTGGGTTTCTCCAGCCCAGCATGTTAAAGCGAGCAGGAGTGGGCTGCCGCCTCTGATCTGAGCTTGAGAGAACATTCTGGAAGTCAAGTCTTGGAAACACTTTGCCTCCGGGGGAGCGGCTTTTGTTTTGGTTGACTCTCGCAGGTCAAACAAACACTCCCCCGCCACCCCCCACAGCCGTCCACCCATCCACTATCCACCCACAAACACCCCCCCACCCCAGCTCCCTCCCCCTATGCTCCAGTCCTCCCGCTCTTGACTCTATCGCTCCGTGTGTAATCCTTGGCAGTAGTGAGCACCCTCTTTCTTGGCCCAATAACACCCCCCAACATTGACCCCCCCCCGCCTGCCCCTCgctcaagttcaagttcaactGGCTATGACATCATGTCTGGTTGCTGCGGGCAACCAGACAGTCAGGACGTGACTTCTCAGTTTGCGGGCCTGTGCTGAAACTCTCACCCTCTGTCCTCGTATGCATTCCCTTCTTCCTTCTCTGTCCTGGGACGGGGTGGCGGTGCAGAACTCACGATTGGCCACCAGGGAGCTCTTCACGGCAACTTTTCACTTTACAGAGTATTATATAGAGGACCTCAGCTTTTGTGCTCGAATAACTTCAACAGAACTAAATTAATAATGCTGTTCTCAAAAAGACGCAAGTTTAGTTTGTGAATAATTAGTTTGAAGAGAATTCGCTGGAAAAAAGTGAGGGATATAATATCCTATACTCTTTATACtacctttttttcccccctttacTTGCCTATGCTGCCACATACACCCTACACCACACTGCCCAATACTACCCCCCTGTACTATGCTAAACTGCCCTTTGCTATCCCACACTATCCTATATCCCTATACactgtgtatttttacactACCCTGTACTGCCTAATACTACTCTATATTGCCCAATACGGCTCTTTTCTGTCCCACACTACCCCTATATTATAACACTGTTCTACCCTATGCTGCCCACTACCCACAATAGGAGGTAGGAgcacataaaaatataagaagTTGCATCACTTCTGTATATGATTCTCAGTTATGTCTATTGttaattttctgatttttctgatAATTTTCTGACTACACTACCCTGTAATCTGCCCTGTACTATCCAAATCccctaaacattttaaaatgctggTGTGTTGAGAAGAATTGAGCTtagtttttaaatcatttgacTTTTTGCAGAgttaatgctttattttttgttttttaaaggtcgAGTGAGGCGAGTTTAAGACCCCAAAGAGAAGAGAGTTGGCTGGAAAAAAAGGGAGGGGTAGACAGATGAAGGGAACGAAGTGAGCAGCGTTGAATGGGAGAATGAAAAGTCAAAGGGAGGTTAAGCAactgagtgagcgagagagtgaaAGCTGGAGCTAAAGACAGCAGCGGCACCTCGCTGCAGAGCTTCAGATGGCTGCCATGTGTTACGGAGCAGGCTGGCTGGGAGCAGGCCCGGGGCGGGTGTGGTTTGCACAGTAATGAGTAAAGTGCAGCGAGTAATGGAGGAGGCCCAGTGTGGTGGCTGCCCACTCGCAACGCTCAAATCAACCTCCACTGCCCCGCTCCCGCCGAGAACGCCTCGGCCCTCTCGGGCCTGCTCCAGATGGGccagataaacacactgtaatGCTTAGTGTACGCAGGAGGGAacgtgagggagagagagagaaagcaatgCAATAGAGAGGAACACAAATTATGAAGTGTGAGGAGAGTTTTAAAACCATGGTTTCAGGACTGTATGTTGAGTTTTATACAGTGACACTctgtataattgtataaatataaCTCATAAACTACTGATCATAAATTGCTGGTTTTCCATTCACCAAGTTTTGGAAAATTTTGAACATACCAAAAAAGAACCACACACAAATATTGCTAAAGATTGTATAAATAATTGCTAAAGCCGACTGTGAAAAAGAGTGAAAAGATTTAAAATGGTTTTTGAATAAACAATGATGTCAATCAACCCAATACTGTTTCATTCTTATTGCTGGAAATACAGTGTATATACAATGATGAACTACTGACTACCCC
>XR_002649328.1
aaaaagaaaagagaaaatcgGAATCAGAGTCAGAGAAACACAATGTAGAACACCATTAAGAAAGTTTTGTtaggaaataaataattttaggaGGAGGTGGAACATGCCTGAAGCTCCCCCCCTTTCCTATTGAACATTTTTACATGTAATGACAAACTCTCACAACCCTTCACTGCCCCATTTCCACCCTTTAAGTCTGTTATCTCTCCTTCCTGACTCTCCTATAGGACAGAGGGACTCGCTTTCTATGACAAGCTGATGCTGGAaattcctcctcctctcctctgcagAAGTTTCTTCTGCCTGAGCTTCCTGCTTCTGTTTGTGTATGGTGTGGTAGAGTGATTTGCCACAAGGATACTTCAGGGACACTTCCAGACATGACATCCCCCTCCTAGAAGAGGCTCCTGCTGGCTCCTAGAAGAGGACCCACTTAGCAGGACCTATAGAAACTTTCAACAAGGTAAATACTTAAGTTATTTACACTAAATGTCCAGTTTTAAGGTTACAATCCCACGTCAGAATGTTGGTGACGAGTCAACTTCTAGTGACTTCTAGTGTAAAGTCTTCAATTTGCACAAATGTCCTGACAAATAATCATTGAAACACTCGAGATTATACTATTTGAAAGGGATCATCTCCTCCTTTTCCCAACTTTCTTTCAGGCTAGAAGAGGAGGACAGGACCTAGTCGTGAAAGTTTCTGGACGCTTCCTCAGCCTGGAGTCAGCATCAACCTACTCAACGCAGTGGTGAATTTATCAGCTCTTACACTAGATGTCGCCATTCTCCTGCTGGCCGGGTTTGGCCGTTCTCTTTCCCCACCCTGACCCTGTCCTCCTGTAGGGGTCTGGAGC
>XR_002649329.1
aaaaagaaaagagaaaatcgGAATCAGAGTCAGAGAAACACAATGTAGAACACCATTAAGAAAGTTTTGTtaggaaataaataattttaggaGGAGGTGGAACATGCCTGAAGCTCCCCCCCTTTCCTATTGAACATTTTTACATGTAATGACAAACTCTCACAACCCTTCACTGCCCCATTTCCACCCTTTAAGTCTGTTATCTCTCCTTCCTGACTCTCCTATAGGACAGAGGGACTCGCTTTCTATGACAAGCTGATGCTGGAaattcctcctcctctcctctgcagAAGTTTCTTCTGCCTGAGCTTCCTGCTTCTGTTTGTGTATGGTGTGGTAGAGTGATTTGCCACAAGGATACTTCAGGGACACTTCCAGGTGAGTTctaatgagtttcttttatttaaattgagcaaaaacagcaaaagaaaaattcattcATAAAGCTTAAATCAATTGATTTCCCCAGTCAGCCTCtggtagtcaaaaatacaaaaaaggctAACAGCAGCCTAAGACAGGTTGCAGAGGATTCTTCAACCATTTTACACAATGCCATCTAAGATAATGTATATACTGGTATTACCGGTAAGTATATTTTAGCTGCCTTTATAATGAatccttcttttcttctttaaaatgttctagACATGACATCCCCCTCCTAGAAGAGGCTCCTGCTGGCTCCTAGAAGAGGACCCACTTAGCAGGACCTATAGAAACTTTCAACAAGGCTAGAAGAGGAGGACAGGACCTAGTCGTGAAAGTTTCTGGACGCTTCCTCAGCCTGGAGTCAGCATCAACCTACTCAACGCAGTGGTGAATTTATCAGCTCTTACACTAGATGTCGCCATTCTCCTGCTGGCCGGGTTTGGCCGTTCTCTTTCCCCACCCTGACCCTGTCCTCCTGTAGGGGTCTGGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409281 True 2687 lncRNA 0.46 3 4803233 4806391
XR_002649328.1 False 856 lncRNA 0.45 3 4802302 4804066
XR_002649329.1 False 924 lncRNA 0.43 3 4802302 4804066

Neighbor

gene id symbol gene type direction distance location
nme4 LOC108440994,LOC108276282,LOC105894955 coding upstream 12619 4773643 ~ 4789683 (+)
xpo6 xpo6 coding upstream 31547 4734668 ~ 4770755 (+)
LOC103025123 fam173a coding upstream 69740 4726687 ~ 4732562 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding upstream 90563 4709464 ~ 4711739 (+)
LOC111191035 LOC108412261,LOC108278278 coding upstream 203497 4511409 ~ 4598805 (+)
gadd45gip1 NA coding downstream 265013 5071404 ~ 5073183 (+)
recql5 recql5 coding downstream 311189 5117580 ~ 5168515 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding downstream 422653 5229044 ~ 5270102 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding downstream 471771 5278162 ~ 5344518 (+)
LOC103026631 NA coding downstream 541984 5348375 ~ 5356879 (+)
G297580 NA non-coding upstream 9 4795994 ~ 4802293 (+)
G297571 NA non-coding upstream 14226 4717779 ~ 4788076 (+)
G297493 NA non-coding upstream 136688 4583856 ~ 4665614 (+)
G297604 NA non-coding downstream 232384 5038775 ~ 5039047 (+)
G297614 NA non-coding downstream 255925 5062316 ~ 5062662 (+)
LOC111191036 NA non-coding downstream 305989 5112380 ~ 5116810 (+)
G297634 NA non-coding downstream 362962 5169353 ~ 5202662 (+)
G297638 NA non-coding downstream 371964 5178355 ~ 5178738 (+)
LOC111191039 NA other upstream 126681 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 368231 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 502855 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1161688 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1653699 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 896121 5702512 ~ 5711874 (+)

Expression


Co-expression Network