G297634


Basic Information

Item Value
gene id G297634
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5169353 ~ 5202662 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409342
TTTATTAATGTCCAATTTATTAATTTCCCATcaataatgcttaaaaaaaggaTGAACAAAAGGATCAAAGAGCACCAATAAGTATCTATATGAGTTTATTCTGATTTGTTATTCACAGAAAGTGCATTTTCATGGCAGGAGTACAGATTTCACAGATCACATACATTTATaggtacatatatatatatatatatatctatgaaAGTGCAGAATGGACAGCCTTGCTGAGTAGATTGCCTTTCTAATAAGGTGCAAACATGTGCTGCCTTCAAGTCCACGACGGAATTTCACTCTTAATTTcgtttaattctgtttttatgttgtttttttagagaCCAAGTATATTTACAGCTACTGAAAAGGAAGCATTAGGTGAATCtatagagtaccagtcaaaagtttggacacaagaaacacataagaaatcatgtagtaaatttaaaactgatcatcaaaccaaaatTCTTGCGgttaacttgtagtttctgaggctggaaactcttatgaacttatcctgtacaacaaggtggccctgatgagtgccagtttcatcattataatgtttttgatggtctttttcgccactgcacttgaggatactttcaaacttCTTGAAATTGacctttattctttatttagctgagtagttcttgcgtctcataatctggattagaacattactcaaatattcactattcactgtatacctgta
>TU409343
CAATAAGTATCTATATGAGTTTATTCTGATTTGTTATTCACAGAAAGTGCATTTTCATGGCAGGAGTACAGATTTCACAGATCACATACATTTATaggtacatatatatatatatatatatctatgaaAGTGCAGAATGGACAGCCTTGCTGAGTAGATTGCCTTTCTAATAAGGTGCAAACATGTGCTGCCTTCAAGTCCACGACGGAATTTCACTCTTAATTTcgtttaattctgtttttatgttgtttttttagagaCCAAGTATATTTACAGCTACTGAAAAGGAAGCATTAGGTGAATCtatagagtaccagtcaaaagtttggacacaagaaacacataagaaatcatgtagtaaatttaaaactgatcatcaaaccaaaatTCTTGCGgttaacttgtagtttctgaggctggaaactcttatgaacttatcctgtacaacaaggtggccctgatgagtgccagtttcatcattataatgtttttgatggtctttttcgccactgcacttgaggatactttcaaacttCTTGAAATTGacctttattctttatttagctgagtagttcttgcgtctcataatctggattagaacattactcaaataatgtaactctacctcttctacctactttacaactgatgctctcaaacctttacattaagagacaagaaattaaaaCGTAgctaattaactcttgatgagttcagcacagctgttaactgaaagcctgagttcctggtgactctaccttataaagcgGTCTAATATATGAAtcgaaacaaacaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409342 False 712 lncRNA 0.33 2 5169353 5202662
TU409343 True 803 lncRNA 0.34 2 5169428 5172780

Neighbor

gene id symbol gene type direction distance location
recql5 recql5 coding upstream 838 5117580 ~ 5168515 (+)
gadd45gip1 NA coding upstream 96170 5071404 ~ 5073183 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding upstream 379670 4773643 ~ 4789683 (+)
xpo6 xpo6 coding upstream 398598 4734668 ~ 4770755 (+)
LOC103025123 fam173a coding upstream 436791 4726687 ~ 4732562 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding downstream 26382 5229044 ~ 5270102 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding downstream 75500 5278162 ~ 5344518 (+)
LOC103026631 NA coding downstream 145713 5348375 ~ 5356879 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding downstream 212535 5415197 ~ 5451392 (+)
dnaja3 LOC108431932 coding downstream 454104 5656766 ~ 5666429 (+)
LOC111191036 NA non-coding upstream 52543 5112380 ~ 5116810 (+)
G297614 NA non-coding upstream 106691 5062316 ~ 5062662 (+)
G297604 NA non-coding upstream 130306 5038775 ~ 5039047 (+)
LOC111191040 NA non-coding upstream 362962 4802302 ~ 4806391 (+)
G297580 NA non-coding upstream 367060 4795994 ~ 4802293 (+)
G297656 NA non-coding downstream 158744 5361406 ~ 5403107 (+)
G297658 NA non-coding downstream 188658 5391320 ~ 5458441 (+)
G297660 NA non-coding downstream 193062 5395724 ~ 5398831 (+)
G297657 NA non-coding downstream 255887 5458549 ~ 5461512 (+)
G297679 pam16,LOC107695711,LOC106601835 non-coding downstream 260043 5462705 ~ 5466991 (+)
LOC111191039 NA other upstream 493732 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 735282 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 869906 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1528739 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2020750 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 499850 5702512 ~ 5711874 (+)

Expression


Co-expression Network