elof1 (elof1,LOC101167459)


Basic Information

Item Value
gene id elof1
gene name elof1,LOC101167459
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4352615 ~ 4355768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409448
CCGCCCGAGCTACTGTTCGCCGTCATAAGTACGCATTCCTCGGTGTGTGTCGGGCTGTTTACTCGCTGCTGTGGTTCTGTAGCGGAGCTCTGCTGTTTGGATTAAGAGTTCACGACTGATAGAGTAAAGATGGCTCGCAGAAAGTCGAAGAGAAAGCCtcctcctaaaaaaaaaatgacggGGAATCTGGACACCCAGTTCACCTGCCCCTTCTGTAACCACGAGAAGTCCTGTGATGTGAAAATgGAAAGAAGCCGAAACACAGGGATTATATCTTGTACTGTGTGCTTGGAGGAGTTCCAGACACCCATAACctATCTCTCTGAACCGGTGGACGTGTACAGCGACTGGATTGATGCTTGTGAAGCAGCCAATCAGTAGCTCCTCTTTTATGGTCAGAAGTTAAGGATGGCAGAGACGTCTGATGCCCTGATATCTAAGaagaatctttattttaaattcataaTATCATCTGAGATCATTTGGTCTTTCCTGGGAATATAGAAATGTGGGACATTTTGTTCAGTCCCTAGTTAGCCATCCTTATGCTCCCAGTTATCTTGTGTTAAATGTTGCGTGATGTGTATAAACAGATTATGTGTAGACTATTATTTCTGAATCAGTAGCtggttggtttgtttgcttATCAGTATCTATCCTTAAATGATGTGTAATTCTATTTGTTTTCAGGACTTTTGTTgtagatttagattttatataatgtaatgaTTGG
>TU409449
CCGCCCGAGCTACTGTTCGCCGTCATAAGTACGCATTCCTCGGTGTGTGTCGGGCTGTTTACTCGCTGCTGTGGTTCTGTAGCGGAGCTCTGCTGTTTGGATTAAGAGTTCACGACTGATAGAGTAAAGATGGCTCGCAGAAAGTCGAAGAGAAAGCCtcctcctaaaaaaaaaatgacggGGAATCTGGACACCCAGTTCACCTGCCCCTTCTGTAACCACGAGAAGTCCTGTGATGTGAAAATGCAAG
>TU409450
atatatattgttttgttccttttttttaggGAAAGAAGCCGAAACACAGGGATTATATCTTGTACTGTGTGCTTGGAGGAGTTCCAGACACCCATAACctATCTCTCTGAACCGGTGGACGTGTACAGCGACTGGATTGATGCTTGTGAAGCAGCCAATCAGTAGCTCCTCTTTTATGGTCAGAAGTTAAGGATGGCAGAGACGTCTGATGCCCTGATATCTAAGaagaatctttattttaaattcataaTATCATCTGAGATCATTTGGTCTTTCCTGGGAATATAGAAATGTGGGACATTTTGTTCAGTCCCTAGTTAGCCATCCTTATGCTCCCAGTTATCTTGTGTTAAATGTTGCGTGATGTGTATAAACAGATTATGTGTAGACTATTATTTCTGAATCAGTAGCtggttggtttgtttgcttATCAGTATCTATCCTTAAATGATGTGTAATTCTATTTGTTTTCAGGACTTTTGTTgtagatttagattttatataatgtaatgaTTGGGTCATTTAATTTCAATAAATTTGTCGCAGAGGTTTTGAGTTATTGTGCATTTTACAttct
>TU409451
CCGCCCGAGCTACTGTTCGCCGTCATAAGTACGCATTCCTCGGTGTGTGTCGGGCTGTTTACTCGCTGCTGTTTGGATTAAGAGTTCACGACTGATAGAGTAAAGATGGCTCGCAGAAAGTCGAAGAGAAAGCCtcctcctaaaaaaaaaatgacggGGAATCTGGACACCCAGTTCACCTGCCCCTTCTGTAACCACGAGAAGTCCTGTGATGTGAAAATgGAAAGAAGCCGAAACACAGGGATTATATCTTGTACTGTGTGCTTGGAGGAGTTCCAGACACCCATAACctATCTCTCTGAACCGGTGGACGTGTACAGCGACTGGATTGATGCTTGTGAAGCAGCCAATCAGTAGCTCCTCTTTTATGGTCAGAAGTTAAGGATGGCAGAGACGTCTGATGCCCTGATATCTAAGaagaatctttattttaaattcataaTATCATCTGAGATCATTTGGTCTTTCCTGGGAATATAGAAATGTGGGACATTTTGTTCAGTCCCTAGTTAGCCATCCTTATGCTCCCAGTTATCTTGTGTTAAATGTTGCGTGATGTGTATAAACAGATTATGTGTAGACTATTATTTCTGAATCAGTAGCtggttggtttgtttgcttATCAGTATCTATCCTTAAATGATGTGTAATTCTATTTGTTTTCAGGACTTTTGTTgtagatttagattttatataatgtaatgaTTGG
>XM_007238225.3
GCCTGGTGGCAGTACCGCGCCGCCCGAGCTACTGTTCGCCGTCATAAGTACGCATTCCTCGGTGTGTGTCGGGCTGTTTACTCGCTGCTGTGGTTCTGTAGCGGAGCTCTGCTGTTTGGATTAAGAGTTCACGACTGATAGAGTAAAGATGGCTCGCAGAAAGTCGAAGAGAAAGCCtcctcctaaaaaaaaaatgacggGGAATCTGGACACCCAGTTCACCTGCCCCTTCTGTAACCACGAGAAGTCCTGTGATGTGAAAATgGAAAGAAGCCGAAACACAGGGATTATATCTTGTACTGTGTGCTTGGAGGAGTTCCAGACACCCATAACctATCTCTCTGAACCGGTGGACGTGTACAGCGACTGGATTGATGCTTGTGAAGCAGCCAATCAGTAGCTCCTCTTTTATGGTCAGAAGTTAAGGATGGCAGAGACGTCTGATGCCCTGATATCTAAGaagaatctttattttaaattcataaTATCATCTGAGATCATTTGGTCTTTCCTGGGAATATAGAAATGTGGGACATTTTGTTCAGTCCCTAGTTAGCCATCCTTATGCTCCCAGTTATCTTGTGTTAAATGTTGCGTGATGTGTATAAACAGATTATGTGTAGACTATTATTTCTGAATCAGTAGCtggttggtttgtttgcttATCAGTATCTATCCTTAAATGATGTGTAATTCTATTTGTTTTCAGGACTTTTGTTgtagatttagattttatataatgtaatgaTTGGGTCATTTAATTTCAATAAATTTGTCGCAGAGGTTTTGA

Function

symbol description
elof1 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin-mediated maintenance of transcription. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Orthologous to human ELOF1 (elongation factor 1 homolog).

NR:

description
PREDICTED: transcription elongation factor 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409448 False 733 lncRNA 0.42 4 4352675 4355749
TU409449 False 250 lncRNA 0.50 2 4353934 4355749
TU409450 False 577 lncRNA 0.36 2 4352615 4353309
TU409451 False 709 lncRNA 0.41 5 4352675 4355749
XM_007238225.3 True 790 mRNA 0.42 4 4352637 4355768

Neighbor

gene id symbol gene type direction distance location
LOC103026684 NA coding downstream 283742 4023006 ~ 4068873 (-)
LOC103029673 NA coding downstream 334990 4009287 ~ 4017625 (-)
LOC103029354 NA coding downstream 397754 3948097 ~ 3954861 (-)
LOC103029048 NA coding downstream 421497 3914173 ~ 3931118 (-)
LOC111191032 NA coding downstream 450667 3900170 ~ 3901948 (-)
swsap1 NA coding upstream 59323 4415091 ~ 4418619 (-)
dhps dhps,LOC107563249,LOC107661880 coding upstream 343708 4699476 ~ 4707428 (-)
fbxw9 fbxw9,LOC107661857 coding upstream 358084 4713852 ~ 4726084 (-)
LOC103025737 nfix,nfixb,LOC107718575,LOC107661654,LOC107715650,LOC107553634 coding upstream 445442 4801210 ~ 5038826 (-)
LOC103031169 LOC108435881,LOC107665693,LOC107548722,LOC108279991,LOC107743034 coding upstream 814624 5170392 ~ 5187553 (-)
G297703 NA non-coding downstream 3017 4254207 ~ 4349598 (-)
G297704 LOC108440983,LOC108258030 non-coding downstream 60364 4291102 ~ 4292251 (-)
G297470 NA non-coding downstream 238633 4106308 ~ 4113982 (-)
G297465 NA non-coding downstream 305248 4041598 ~ 4047367 (-)
G297459 NA non-coding downstream 363622 3988443 ~ 3988993 (-)
G297736 NA non-coding upstream 77827 4433595 ~ 4434460 (-)
G297738 NA non-coding upstream 80240 4436008 ~ 4436596 (-)
G297755 NA non-coding upstream 124646 4480414 ~ 4481039 (-)
G297765 NA non-coding upstream 161791 4517559 ~ 4605850 (-)
G297764 NA non-coding upstream 185915 4541683 ~ 4602730 (-)
G297334 farsa,LOC106601350 other downstream 741920 3596487 ~ 3610695 (-)
G297195 kpna2,LOC108432045,LOC108261381 other downstream 1125444 3224207 ~ 3227171 (-)
LOC103037146 NA other downstream 1821113 2497215 ~ 2531502 (-)
LOC111191047 NA other downstream 2494793 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 2963906 1371515 ~ 1388709 (-)
G297720 NA other upstream 9809 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 719723 5075491 ~ 5112720 (-)
LOC103032059 coro7,LOC108431934,LOC108276516,LOC107553663 other upstream 1117028 5472796 ~ 5655479 (-)
G297905 NA other upstream 1246320 5602088 ~ 5602948 (-)

Expression


Co-expression Network