G297904



Basic Information


Item Value
gene id G297904
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5604189 ~ 5612425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU409781
cttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaac
>TU409786
cttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaac
>TU409787
acctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccagttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagca
>TU409790
cttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccactgagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccactagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccac

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU409781 False 204 lncRNA 0.49 3 5607613 5612425
TU409786 False 290 lncRNA 0.50 4 5607613 5612093
TU409787 True 504 lncRNA 0.48 4 5604189 5611204
TU409790 False 271 lncRNA 0.49 2 5607613 5608088

Neighbor


gene id symbol gene type direction distance location
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding upstream 152797 5415197 ~ 5451392 (+)
LOC103026631 NA coding upstream 247310 5348375 ~ 5356879 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding upstream 259671 5278162 ~ 5344518 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding upstream 334087 5229044 ~ 5270102 (+)
recql5 recql5 coding upstream 435674 5117580 ~ 5168515 (+)
dnaja3 LOC108431932 coding downstream 44341 5656766 ~ 5666429 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding downstream 106644 5719069 ~ 5719464 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 131363 5743788 ~ 5761476 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding downstream 152574 5764999 ~ 5828725 (+)
LOC103034280 LOC108438908,LOC108276786 coding downstream 224080 5836505 ~ 5851771 (+)
G297903 NA non-coding upstream 1310 5601099 ~ 5602879 (+)
G297902 NA non-coding upstream 3176 5600192 ~ 5601013 (+)
G297901 NA non-coding upstream 5113 5598856 ~ 5599076 (+)
LOC111191054 NA non-coding upstream 122849 5467923 ~ 5481340 (+)
G297681 NA non-coding upstream 130682 5472799 ~ 5473507 (+)
G297910 NA non-coding downstream 11293 5623718 ~ 5624869 (+)
G297916 NA non-coding downstream 73010 5685435 ~ 5686549 (+)
G297924 NA non-coding downstream 91309 5703734 ~ 5741207 (+)
G297926 NA non-coding downstream 118005 5730430 ~ 5731876 (+)
G297930 NA non-coding downstream 145926 5758351 ~ 5762495 (+)
LOC111191039 NA other upstream 928568 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1170118 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1304742 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1963575 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2455586 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 90087 5702512 ~ 5711874 (+)

Expression



Co-expression Network