G297916


Basic Information

Item Value
gene id G297916
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5685435 ~ 5686549 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409808
CTGTAATGCATTATTCTCCAGCAGAAACTTCACCGCCTCCATATAGATGGTGGTGTTGGGTCTGGTAAAGGGCTGGTGTACGACAGGATGCTCAGTATCAGAATCTGCAGCGTAACCCTGCCCTGTTTTAACCTCCTGGATGGTGGAAGACCTATGTTCCTCTGTCCGATCACCCAGAGCTGGTGTGTTACTCAGAGACTCACTGTCCCCCACTTCCTGTCCCTGTCCTCCCTCCACCTGGGTCTGAGTGCTGTCCACCTCTGGAAGACGCGTCAGGGCTGCCTGGAGTTTTGTAGCTTTGAGGAAAGCCATTTCTGCTCGGATGGGGTTCTCCTGTGCCAGGTAGAACAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409808 True 354 lncRNA 0.54 2 5685435 5686549

Neighbor

gene id symbol gene type direction distance location
dnaja3 LOC108431932 coding upstream 19006 5656766 ~ 5666429 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding upstream 234043 5415197 ~ 5451392 (+)
LOC103026631 NA coding upstream 328556 5348375 ~ 5356879 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding upstream 340917 5278162 ~ 5344518 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding upstream 415333 5229044 ~ 5270102 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding downstream 32520 5719069 ~ 5719464 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 57239 5743788 ~ 5761476 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding downstream 78450 5764999 ~ 5828725 (+)
LOC103034280 LOC108438908,LOC108276786 coding downstream 149956 5836505 ~ 5851771 (+)
LOC111191062 LOC108438908,LOC108276786 coding downstream 180565 5867114 ~ 5884363 (+)
G297910 NA non-coding upstream 60566 5623718 ~ 5624869 (+)
G297904 NA non-coding upstream 73010 5604189 ~ 5612425 (+)
G297903 NA non-coding upstream 82556 5601099 ~ 5602879 (+)
G297902 NA non-coding upstream 84422 5600192 ~ 5601013 (+)
G297901 NA non-coding upstream 86359 5598856 ~ 5599076 (+)
G297924 NA non-coding downstream 17185 5703734 ~ 5741207 (+)
G297926 NA non-coding downstream 43881 5730430 ~ 5731876 (+)
G297930 NA non-coding downstream 71802 5758351 ~ 5762495 (+)
G297933 NA non-coding downstream 80973 5767522 ~ 5834140 (+)
G297936 NA non-coding downstream 140562 5827111 ~ 5828278 (+)
LOC111191039 NA other upstream 1009814 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1251364 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1385988 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 2044821 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2536832 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 15963 5702512 ~ 5711874 (+)

Expression


Co-expression Network