G297926


Basic Information

Item Value
gene id G297926
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5730430 ~ 5731876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409819
gaactttatcatattcttgttttttgtgcattacaggcaaaaaaaaacttttttatatttttccatatttttccaTAACTGGAATATAACTCAGGTCTAAAAGTGTTAATGCAGATAACTGATCAGTTCCAATCAAGGCTGCCTGCCAATCactataaatcaatcaatcctATCAATTCCTAAATAAAGCCCTGCCCTAATACTGTAGATAATATAGCAGAATAATGTTTATAAACTGATTTCTGAGCAAGAATGAAATGTGGTGATATAGCACAGAGAAAGCTTTGGAATTGTTGGagtgtgtaATGAttcttattgctatcttacaccctaccaACAGTCTAtattcactccttcctcctgcatagtttgAATAGCAACAGTGCgtgtaaatatatctacactgatggccgTTCGGTTCAAAtcaatttctggcatattgctatcttggcaacagaaaacacaggtgctccactgattTTGAATTTTTACATCCACAATTAatagaatactaaataaaataacattgctgttcccttaaatgagcaaAACCCTGTGTAAATGAGTAGGTTAGTTTCCTCTGCCgagaagtgttggacacgtccaggtagctgtgctgttaaaatagcaattcgcaaaagtcagagcacacctggctcttaaagggaatgatgagcaagtgacactctgaatatttatgtttatgtcaCTTTACGcacaaaacacacctatgattaattaagagaattagtaccgCTACATGCCTTTTGTGGTTTTCGAGCCGcaaaaggtgtacttttcctgttgttacgatagcaaagacacactcacacgctaaatcaagctgcacgatgCACTATTGACGGCTAACCTGTAGATCCCTAAAATAGGACTCTTAGGAAGAGATGAGATGAAAAATGGGTGGGGAGGTTTTGTCCTTGAAACTTATGGGGATGGGCGGAGCTACACTTAATgcgtcatactgcaaccagccagtagGGGCACTAGTCCTCTAGCTGTTTCACTTTTAAGAGATGTTGGGTTGGGATGTCCATGCTTTTATACAGTCATTGGATTCCTTATAACAGATTTATTCAAAGACAGTAATGGGTTTTCACAAACTATTATGTGAAATATGTTTATTCttctgtaaaaaaagtaaaaaacaaggtaaaatctacctctctctttctatctctttctttctccctctctctctctctttctctctctttctctctctgtaatctgACAGGGCATTATGGTGCCTGTATGCTGCAGAATATGAAGACTGTCACTAGCCTGAGGCAGATGTCTGCCCATATGTGttgtgtattatatatgtaaCTGTAATTACCACTCGgatatagtatttatatatttatatgcataTGTGAGC

Function

GO: NA

KEGG:

id description
ko04022 cGMP-PKG signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU409819 True 1399 lncRNA 0.37 2 5730430 5731876

Neighbor

gene id symbol gene type direction distance location
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding upstream 10966 5719069 ~ 5719464 (+)
dnaja3 LOC108431932 coding upstream 64001 5656766 ~ 5666429 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding upstream 279038 5415197 ~ 5451392 (+)
LOC103026631 NA coding upstream 373551 5348375 ~ 5356879 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding upstream 385912 5278162 ~ 5344518 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 11912 5743788 ~ 5761476 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding downstream 33123 5764999 ~ 5828725 (+)
LOC103034280 LOC108438908,LOC108276786 coding downstream 104629 5836505 ~ 5851771 (+)
LOC111191062 LOC108438908,LOC108276786 coding downstream 135238 5867114 ~ 5884363 (+)
LOC103034605 NA coding downstream 162890 5894766 ~ 5912389 (+)
G297916 NA non-coding upstream 43881 5685435 ~ 5686549 (+)
G297910 NA non-coding upstream 105561 5623718 ~ 5624869 (+)
G297904 NA non-coding upstream 118005 5604189 ~ 5612425 (+)
G297903 NA non-coding upstream 127551 5601099 ~ 5602879 (+)
G297902 NA non-coding upstream 129417 5600192 ~ 5601013 (+)
G297930 NA non-coding downstream 26475 5758351 ~ 5762495 (+)
G297933 NA non-coding downstream 35646 5767522 ~ 5834140 (+)
G297936 NA non-coding downstream 95235 5827111 ~ 5828278 (+)
G298007 NA non-coding downstream 133661 5865537 ~ 5890766 (+)
G298009 NA non-coding downstream 141605 5873481 ~ 5874591 (+)
LOC103033323 NA other upstream 18556 5702512 ~ 5711874 (+)
LOC111191039 NA other upstream 1054809 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1296359 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1430983 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 2089816 3550327 ~ 3640614 (+)

Expression


Co-expression Network