G297936


Basic Information

Item Value
gene id G297936
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5827111 ~ 5828278 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409845
TAatcacttgaatttcttgtctcttaatgtaaaggtttgagagcatcagttaaagtaaagtagtgaagaggtagagttacaggtatacagtgaatagtgaatatttgagtaatgttctaatccagattatgagaagcaacaactactcaactaaataaagaaaagtaaaaaatgactAAGAATTGGAGGTCTGAAAATCTTAAGAGTTTAAAGAACTTCgaaagcatcctcaagtgcatacaatatgatgattatgatgatgatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409845 True 266 lncRNA 0.31 2 5827111 5828278

Neighbor

gene id symbol gene type direction distance location
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 65635 5743788 ~ 5761476 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding upstream 107647 5719069 ~ 5719464 (+)
dnaja3 LOC108431932 coding upstream 160682 5656766 ~ 5666429 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding upstream 375719 5415197 ~ 5451392 (+)
LOC103026631 NA coding upstream 470232 5348375 ~ 5356879 (+)
LOC103034280 LOC108438908,LOC108276786 coding downstream 8227 5836505 ~ 5851771 (+)
LOC111191062 LOC108438908,LOC108276786 coding downstream 38836 5867114 ~ 5884363 (+)
LOC103034605 NA coding downstream 66488 5894766 ~ 5912389 (+)
LOC111191063 NA coding downstream 88744 5917022 ~ 5930346 (+)
rnps1 LOC108411755,LOC103909923,LOC107553655 coding downstream 111969 5940247 ~ 5951494 (+)
G297930 NA non-coding upstream 64616 5758351 ~ 5762495 (+)
G297924 NA non-coding upstream 85904 5703734 ~ 5741207 (+)
G297926 NA non-coding upstream 95235 5730430 ~ 5731876 (+)
G297916 NA non-coding upstream 140562 5685435 ~ 5686549 (+)
G297910 NA non-coding upstream 202242 5623718 ~ 5624869 (+)
G298007 NA non-coding downstream 37259 5865537 ~ 5890766 (+)
G298009 NA non-coding downstream 45203 5873481 ~ 5874591 (+)
G298004 NA non-coding downstream 54043 5882321 ~ 5887115 (+)
LOC103033323 NA other upstream 115237 5702512 ~ 5711874 (+)
LOC111191039 NA other upstream 1151490 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1393040 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1527664 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 2186497 3550327 ~ 3640614 (+)

Expression


Co-expression Network