G298004


Basic Information

Item Value
gene id G298004
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5882321 ~ 5887115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409931
gatagatagatagatagatagatagatagatagatagatagatctccTCAGTCTGTAGCAGTGTCCTGTCCACTATGAGAAGTCTGATGGTTATAGGGACAAAGGATCTCCTCAGTCTGTAGCAGTGTCCTGTACACAATAAGAGGTCTGATGGTTCTAGAGACAAAGAATTTCCACAGTCTATAGAAGTGTCCTGTCTTCAATAAGAAATCTGATGTTTCTAGGGACAAAGGATCTACTCAATCTGTAGCAGTGTCCTGTTCACAATAAGAAGTCTGATGGTTCTAGTGACAAAGAATCTCCTCAGTCTGTAGTAGAGTCCAGTCTACAACAAGAAGTCTGATGGTTCTAGAGACAAAGAATCTCCTCAGTCTGTAGCAGTGTCCTCTCCCCAGTAATAAGTCTGATGGATCTAGAGACAAAAGATCTCCTCAGTCTGTAGCAGTGTCCTGTCCCCTGTAATAAGTCTGATGGTTCTAGAGACAAAGCATCTTCTCAGTCTGTAGCAGTGTCCTGTCTTCAATAAGAAATCTGATATTTCTAGGGACAAAGGATCTTCTCAATCTGTAACAGTGTCCTGTCCCCAGTAATAAGTCTGATGGTTCTAGAGACAAAGGATCTCCTCAGTCTGTAGTAGTGTCCTGTCCTCAGTATATGAATCTAAAATTGTGGTATGTATCATTTTTTCTGCAGGGCGCAGGGTGTGTCTGGGGGAGAGTCTGGCGAGGATGgagctcttcctcttcttcaccTCCCTCCTCCAACACTTCCGCTTCACTCCTCCACCAGGTGTCTCCAAGGATCAGCTGGACCTCACGCCAGTGAGCGGCATCACTCTGAACCCTTCACCTCACAAACTGTGTGCAGTAAAACGATCCTAATTCTGCTGATTTTGGGGAAATcagcattttgttttaatggtcactgctttaattttcagcaccaaccttataaacgttcatctttagccttgcagtctcacagacttttagtgcccattattagggtaatta

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU409931 True 1013 lncRNA 0.43 3 5882321 5887115

Neighbor

gene id symbol gene type direction distance location
LOC103034280 LOC108438908,LOC108276786 coding upstream 30550 5836505 ~ 5851771 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding upstream 53596 5764999 ~ 5828725 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 120845 5743788 ~ 5761476 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding upstream 162857 5719069 ~ 5719464 (+)
dnaja3 LOC108431932 coding upstream 215892 5656766 ~ 5666429 (+)
LOC103034605 NA coding downstream 7651 5894766 ~ 5912389 (+)
LOC111191063 NA coding downstream 29907 5917022 ~ 5930346 (+)
rnps1 LOC108411755,LOC103909923,LOC107553655 coding downstream 53132 5940247 ~ 5951494 (+)
LOC111191058 NA coding downstream 66531 5953646 ~ 5964403 (+)
G298009 NA non-coding upstream 7730 5873481 ~ 5874591 (+)
G297933 NA non-coding upstream 48181 5767522 ~ 5834140 (+)
G297936 NA non-coding upstream 54043 5827111 ~ 5828278 (+)
G297930 NA non-coding upstream 119826 5758351 ~ 5762495 (+)
G297924 NA non-coding upstream 141114 5703734 ~ 5741207 (+)
LOC103033323 NA other upstream 170447 5702512 ~ 5711874 (+)
LOC111191039 NA other upstream 1206700 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1448250 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1582874 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 2241707 3550327 ~ 3640614 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location