LOC103038737 (plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566)


Basic Information

Item Value
gene id LOC103038737
gene name plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4080149 ~ 4159462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238229.3
gagagagagagcggtggAGAGACAGTGGGGTTCAGTGCTGGATCTGAAGGCAGAGCTGGAGCTCCTCCACCATGGCTACTGCATAGGAATCCGTCTGCACAGCAGCAGTGGGATATATATAAGGTGAGAGAAGtaggaggaaaagaaaaagtgaaagaagaaaagcaaaaagacagAGACATGGCGGCGGAGGAGAAGCCCGGAGTGAAGAACAGCACCTCCATCCTTCCCTGCTTCCTGTTCGTGGAGCTGGTGATCATGGCGGGCACCGTGCTGTTGGCGTATTACTTCGAGTACACCGACACCTTCCCCGTGCACGTCCAGGGCTTCTTCTGCTACGACAAGTCCTTCTCCAAGCCCTACCCGGGTCCCGACGAGACCAGCAAAGTGCCGCCGGTGCTGGTCTACTCGCTGGTCACCGCCGTGCCCACCATCACGATTCTAGCCGGTGAGTTGATGGCATTCTTCATGAAGTCTGAAGGAACTCAAGAGAAGACCATCGTCACAGCAGACTGCTGCTACTTCAACCCGCTGCTGCGACGCATCATACGCTTTCTAGgcgTCTACTCCTTTGGTCTCTTCACCACTACTATCTTTGCCAACGCCGGTCAGGTGGTCACAGGAAACCAGACGCCTCACTTCCTGTCAGCTTGCCGGCCGAACTACACAGCGCTGGGCTGCCAGTCGAATCTCCAGTACATCACTGAACGTCGTGCCTGCACCGGGAACCCTCTCATCGTGGCATCTGCCCGCAAATCCTTCCCTTCCAAGGATGCAGCACTGAGCGTCTACTCTGCAGTTTATACTGTGATGTACGTGACGTTGGTGTTCAGGACGAAAGGTACCCGCCTGACTAAACCGACCCTCAGCCTCACCCTGCTGTGCCTGGCCATGCTGGTGGGGGTGGTACGGGTGGCGGAGTACCGCAACCACTGGGCAGATGTTCTTGCTGGATACTTTACCGGAGGAGCCATCGCTGTTTTTCTGGTGACCTGTGTGATCAACAACTTTCAGCAGACAAAGCCCCCTCCTCTTCCCCTGCGACCCCAGCGCCCAGAGTCCGTGCTGGGCATGCCCATGGTGGCGCTGCCCTGTGTGGAGAGTCCACTCGAAAAACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCACTATCGGTTCCCCGCCACCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCGAGCCGCACGCTCACCAGTGCTCCGCCCACACCGCCGGACGCTACGCCACCCTCCACCGCTCCTACTCCACGCAGGTCTAGACCCGCCCGCTCCGcctccaccctccaccccaTCAGGCCCTCTGTTCCATGCTGCCCTCAGGGCTGCCATGCGCTGCTCCAACAAACCAGAAGCGACAATCCGCGGAAAGCTCGGTTACGGAGCTTCGCCCGAGCTTTTGGTCCAGGATGTTTGTGCCAGCAAAAGCTCAAGGTGATGGAACGTTTGTCTGAGGCAGACATTATGTCTTGGTTAGTTTGTCTGAGCAGTGCATTGAAGCCTTTACATTTAGCTTAAAAAACCTGTCCTGTCCAGTCCAAACCATCCAGACCTATTCCCAGGGGAACCGATGGAGTCCTGCTCATGTGCGGGACTTCTGAGAAAATCAAAAAAGAAAcgaacaaaccaaaaaaagactaaaataatAGCACAGTGTCTGGTAGGcctcttttatttattgatttattgatttatttattatttttgtatttttttttttttacatttttgtgtgttttttt
>XM_007238231.3
gagagagagagcggtggAGAGACAGTGGGGTTCAGTGCTGGATCTGAAGGCAGAGCTGGAGCTCCTCCACCATGGCTACTGCATAGGAATCCGTCTGCACAGCAGCAGTGGGATATATATAAGGTGAGAGAAGtaggaggaaaagaaaaagtgaaagaagaaaagcaaaaagacagAGACATGGCGGCGGAGGAGAAGCCCGGAGTGAAGAACAGCACCTCCATCCTTCCCTGCTTCCTGTTCGTGGAGCTGGTGATCATGGCGGGCACCGTGCTGTTGGCGTATTACTTCGAGTACACCGACACCTTCCCCGTGCACGTCCAGGGCTTCTTCTGCTACGACAAGTCCTTCTCCAAGCCCTACCCGGGTCCCGACGAGACCAGCAAAGTGCCGCCGGTGCTGGTCTACTCGCTGGTCACCGCCGTGCCCACCATCACGATTCTAGCCGGTGAGTTGATGGCATTCTTCATGAAGTCTGAAGGAACTCAAGAGAAGACCATCGTCACAGCAGACTGCTGCTACTTCAACCCGCTGCTGCGACGCATCATACGCTTTCTAGgcgTCTACTCCTTTGGTCTCTTCACCACTACTATCTTTGCCAACGCCGGTCAGGTGGTCACAGGAAACCAGACGCCTCACTTCCTGTCAGCTTGCCGGCCGAACTACACAGCGCTGGGCTGCCAGTCGAATCTCCAGTACATCACTGAACGTCGTGCCTGCACCGGGAACCCTCTCATCGTGGCATCTGCCCGCAAATCCTTCCCTTCCAAGGATGCAGCACTGAGCGTCTACTCTGCAGTTTATACTGTGATGTACGTGACGTTGGTGTTCAGGACGAAAGGTACCCGCCTGACTAAACCGACCCTCAGCCTCACCCTGCTGTGCCTGGCCATGCTGGTGGGGGTGGTACGGGTGGCGGAGTACCGCAACCACTGGGCAGATGTTCTTGCTGGATACTTTACCGGAGGAGCCATCGCTGTTTTTCTGGTGACCTGTGTGATCAACAACTTTCAGCAGACAAAGCCCCCTCCTCTTCCCCTGCGACCCCAGCGCCCAGAGTCCGTGCTGGGCATGCCCATGGTGGCGCTGCCCTGTGTGGAGAGTCCACTCGAAAAGTTAAGTGGCCCTCAGACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCACTATCGGTTCCCCGCCACCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCGAGCCGCACGCTCACCAGTGCTCCGCCCACACCGCCGGACGCTACGCCACCCTCCACCGCTCCTACTCCACGCAGGTCTAGACCCGCCCGCTCCGcctccaccctccaccccaTCAGGCCCTCTGTTCCATGCTGCCCTCAGGGCTGCCATGCGCTGCTCCAACAAACCAGAAGCGACAATCCGCGGAAAGCTCGGTTACGGAGCTTCGCCCGAGCTTTTGGTCCAGGATGTTTGTGCCAGCAAAAGCTCAAGGTGATGGAACGTTTGTCTGAGGCAGACATTATGTCTTGGTTAGTTTGTCTGAGCAGTGCATTGAAGCCTTTACATTTAGCTTAAAAAACCTGTCCTGTCCAGTCCAAACCATCCAGACCTATTCCCAGGGGAACCGATGGAGTCCTGCTCATGTGCGGGACTTCTGAGAAAATCAAAAAAGAAAcgaacaaaccaaaaaaagactaaaataatAGCACAGTGTCTGGTAGGcctcttttatttattgatttattgatttatttattatttttgtatttttttttttttacatttttgtgtgttttttt
>XM_007238232.3
ctttctgtactcttccctctctctctaggaccatctctctctctctctctctcttccccatCTCTCTCCGATGCTAGAAAACATGTTCCTTCTCTGTAGgagctcttctctctctttccttcactctctctctttccatattcctctctctctctctttctctctccatctctctctatctctctgatACTAGAAAACGTGTTCCCTCTCTGTAGgcgcttctctctctttccttcgctctctctctttccatactcctctctctctctccgatgTTAGAAAACATGTTCCTTCTCTGTAggagcttttctctctctttccttcactctctctctctttccatactcctctctctctctctctttctctctccatctctctctctctatctctctgatACTAGAAAACGTGTTCCTTCTCTGTaggagcttctctctctctctctctctctctcgatgccggtgttggtgtgtgtggtagtAAAGCTGTGGAgtgtttctcctcctcctcctttttcttcttcttcttcttctggatTGTAAAGGCAGGATCATGTTCTATTTCCAGCTGGTGATCATGGCGGGCACCGTGCTGTTGGCGTATTACTTCGAGTACACCGACACCTTCCCCGTGCACGTCCAGGGCTTCTTCTGCTACGACAAGTCCTTCTCCAAGCCCTACCCGGGTCCCGACGAGACCAGCAAAGTGCCGCCGGTGCTGGTCTACTCGCTGGTCACCGCCGTGCCCACCATCACGATTCTAGCCGGTGAGTTGATGGCATTCTTCATGAAGTCTGAAGGAACTCAAGAGAAGACCATCGTCACAGCAGACTGCTGCTACTTCAACCCGCTGCTGCGACGCATCATACGCTTTCTAGgcgTCTACTCCTTTGGTCTCTTCACCACTACTATCTTTGCCAACGCCGGTCAGGTGGTCACAGGAAACCAGACGCCTCACTTCCTGTCAGCTTGCCGGCCGAACTACACAGCGCTGGGCTGCCAGTCGAATCTCCAGTACATCACTGAACGTCGTGCCTGCACCGGGAACCCTCTCATCGTGGCATCTGCCCGCAAATCCTTCCCTTCCAAGGATGCAGCACTGAGCGTCTACTCTGCAGTTTATACTGTGATGTACGTGACGTTGGTGTTCAGGACGAAAGGTACCCGCCTGACTAAACCGACCCTCAGCCTCACCCTGCTGTGCCTGGCCATGCTGGTGGGGGTGGTACGGGTGGCGGAGTACCGCAACCACTGGGCAGATGTTCTTGCTGGATACTTTACCGGAGGAGCCATCGCTGTTTTTCTGGTGACCTGTGTGATCAACAACTTTCAGCAGACAAAGCCCCCTCCTCTTCCCCTGCGACCCCAGCGCCCAGAGTCCGTGCTGGGCATGCCCATGGTGGCGCTGCCCTGTGTGGAGAGTCCACTCGAAAAGTTAAGTGGCCCTCAGACTCCAAGGGGATCTCCATTCACTGAGATCACATGACCATCAGCACTATCGGTTCCCCGCCACCCCCGATGTCCTCATACCGTCTCGCTCCATTTCCAGCGAAGTCTAGACCAGCCGTCCGAGCCGCACGCTCACCAGTGCTCCGCCCACACCGCCGGACGCTACGCCACCCTCCACCGCTCCTACTCCACGCAGGTCTAGACCCGCCCGCTCCGcctccaccctccaccccaTCAGGCCCTCTGTTCCATGCTGCCCTCAGGGCTGCCATGCGCTGCTCCAACAAACCAGAAGCGACAATCCGCGGAAAGCTCGGTTACGGAGCTTCGCCCGAGCTTTTGGTCCAGGATGTTTGTGCCAGCAAAAGCTCAAGGTGATGGAACGTTTGTCTGAGGCAGACATTATGTCTTGGTTAGTTTGTCTGAGCAGTGCATTGAAGCCTTTACATTTAGCTTAAAAAACCTGTCCTGTCCAGTCCAAACCATCCAGACCTATTCCCAGGGGAACCGATGGAGTCCTGCTCATGTGCGGGACTTCTGAGAAAATCAAAAAAGAAAcgaacaaaccaaaaaaagactaaaataatAGCACAGTGTCTGGTAGGcctcttttatttattgatttattgatttatttattatttttgtatttttttttttttacatttttgtgtgttttttt

Function

symbol description
plppr2a Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PLPPR2 (phospholipid phosphatase related 2).

NR:

description
PREDICTED: phospholipid phosphatase-related protein type 5-like isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238229.3 False 1796 mRNA 0.54 8 4080149 4159462
XM_007238231.3 False 1812 mRNA 0.54 8 4080149 4159462
XM_007238232.3 True 2130 mRNA 0.52 6 4122520 4159462

Neighbor

gene id symbol gene type direction distance location
LOC103046751 LOC108432062 coding upstream 254509 3776523 ~ 3825640 (+)
LOC103025262 LOC108432064,LOC108256459 coding upstream 313662 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 428814 3645713 ~ 3651335 (+)
farsa farsa coding upstream 459322 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 484778 3574633 ~ 3595371 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 163649 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 197525 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 208256 4367718 ~ 4392866 (+)
epor NA coding downstream 242178 4401640 ~ 4414691 (+)
LOC103021497 NA coding downstream 327442 4486904 ~ 4508485 (+)
G297398 NA non-coding upstream 54789 4025049 ~ 4025360 (+)
G297392 NA non-coding upstream 56518 4021560 ~ 4023631 (+)
G297377 NA non-coding upstream 92034 3886699 ~ 3988115 (+)
G297387 NA non-coding upstream 125241 3940556 ~ 3954908 (+)
LOC111191051 NA non-coding upstream 194042 3865940 ~ 3886107 (+)
G297497 NA non-coding downstream 55833 4215295 ~ 4275823 (+)
G297516 NA non-coding downstream 193191 4352653 ~ 4355964 (+)
G297529 NA non-coding downstream 258514 4417976 ~ 4418769 (+)
G297530 NA non-coding downstream 271871 4431333 ~ 4435857 (+)
G297531 NA non-coding downstream 276604 4436066 ~ 4436423 (+)
LOC103030733 NA other upstream 439535 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 931546 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2718214 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2789729 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2879361 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 93554 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 260535 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 491181 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1543050 5702512 ~ 5711874 (+)

Expression


Co-expression Network