LOC103025262 (LOC108432064,LOC108256459)


Basic Information

Item Value
gene id LOC103025262
gene name LOC108432064,LOC108256459
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3704804 ~ 3766487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664967.1
AGGAAGCTGATCGGTGGAGATAGGGTGGAGGGTGGAGGCTCGGTCTTGCGGTGGAAGCGCTTTATTCCGGGTTAAACATGGCAGAGGAGGACGATCATTACGGGAAACACGGTGAGCCCAGAAAATATGACCCCAACTTCAGAGGACCCATTCAGAACAGAGGATGTACAGACATAATATGCTGTATTTTCTTCATCTTGGCCATAGTGGGATATGTCGCTGTGGGAATAGTGGCATGGTCTCAGGGGGATCCCAGGAAGGTGATCTATCCCACAGACAGTATGGGACAGTTCTGTGGGCAGGTTGGAACTCCTCTGGAgaaAAAACCCTTCCTGTTCTACTTCAACATCCTGAAATGTGCCAGTCCTGTGGTCCTTGTGGAGTTTCAGTGTCCAACCACTCAGCTGTGTGTGGAGGAATGCCCCACTCGCTCCATGACCCTGGTGCAGGCCAAGGCTCCTGGAGGCGACTGGAGCTACTATAAAAAGTTCTGTAAGGACGTTTCAGATACAGAGACCGTTCCAAACATCTTGGCAAAGCGGCTGTGTCCTGCAATGCTCATCGCTAGCAAACCCTtcaCCCGGAGGTGTTTCCCAGCTCTGGGTCTGAAGGGCGATGAGGTCACTGTAGGAAATAAAACCACATTTAATGACGGACAGAGCGACAGAAAGGCCAGCGACCTCCTGCCTGCAGTGAAGAATGCCACAATAGTGATGGAAACTCGtctggtggtgatgaagatctTTGAGGATTTTGCACACTCATGGTATTGGATCGTTACTGGTCTGGTGATAGCAACTGTCCTGAGTCTGATCTTCATCGTGCTGCTGAGGTTCCTGGCTGGTATAATGGTCTGGGTCATGATTGTCCTGGTGATCCTCGTCATCGGATACGGAATCTTCCACTGCAGCATGGAGTACGTTAATCTGAAGAACGCCCCCGGTTCGAACGTCACCCTTAAGGAGCTGGGCTTCCAGATGGACCTGACTGTGTATCTCCACATCAGACAGACCTGGCTGGCTTTCATCATCATTCTGGCCATAGTGGAGGTGGTGATCATCCTGCTGCTCATCTTCCTCAGAAACAGGATAAGAATCGCCATCGCTCTCATCAAAGAGGCCAGCAAGGCTATTGGTCACGTGATGTCCTCCCTGTTTTACCCCCTGTTCACCTTCGCCCTGCTGGCTGTGGTTATTGCATACTGGGCCATCACTGCTGTCTTCCTGTCTACATCTAATGAACCAATATACAAAATCTTCAACATGGGCAATAAGGAGTGCATCTATGCAAACCAAACCTGCAATCCTGAGAACTACTCAAGGTCAGACATGAAGTTGGACTGCCCGGAGTCTCAGTGCCTTTTCGCTTTCTACGGCGGAGAATCCCACTACCACAAGTACCTCATCTTCCTCCAGTTCTACAAcgtcttcctcttcttctggtGTGCCAACTTCGTCATCGCCCTGGGCCAGATGACCCTGGCTGGGGCTTTTGCTTCGTATTACTGGGCGTTCAATAAGCCTCGTGACATGCCCACCTGCCCCGTGTTCGCCTCCCTCGGCAGAGCTCTCAGgtatCACACAGGCACTCTTGCTTTCGGCGCCCTCATCTTGGCAATCGTTCAGATAATCAGGGTTCTGCTGGAGTACCTGGATCACAAACTCAAAGGAGCTCAGAACAAGTTTGCCAAGTTCTTGCTCTGCTGCCTCAAGTGTTGCTTCTGGTGCCTGGAAAAGTTCATCAAGTTCATCAACAGGAATGCTTACATCATGGTGGCCATATATGGTAAGAACTTCTGCACTTCAGCCAGAGATGCCTTCTTCCTGTTGATGAGAAACGTGATCAGGGTGGCTGTTCTGGATAAGGTCACAGACTTCTTGCTGTTCTTGGGAAAACTCCTTATTGTGGGAATTGTggGAATCAtttcattcttcttcttctctggaAGAACGAAAGGACTGGATGTCGTACCCAATCTGCACTATTACTGGGTGCCCATTATGacgATTGCATTGGGCTCTTATCTAATAGCTCACGGCTTCTTCAGTGTGTATGGGATGTGCGTGGACACACTTTTCCTCTGCTTCTGCGAGGACCTGGAGCGTAACGATGGCTCTGCCGCCCGGCCCTATTACATGTCCAGCTCGCTGCGCGACATCCTCTTCAAGAACGTGGAGGATCCAGTCACCCGTTCTCCATCTTCACCTCAGGAAGAGGATGTCCCCCTGAGTACACGGAAGGAGTCCACGGAATGAGGCCGATGCACATTAGCGCTAAGCTGCCAGAAATCGTTTACTCTGAATCTGGATTTTTTGTTTCTGAAAAAAATGCAGTAGGGTTGCAGTGCATTAATTGAccataataatgataaacataattataaatGTGACTTATCACAGTGACCGATCACAGACTAATACATGTGCACTCGATAGTTGCTATGGGATTATAATGGGATTAAATGTCTGGAAATTAGTGCATTTTAGCTGTTTCtcagagctggattactcactgataTATGATGACAGCCTATAAATCCTGCAGTGGCAGGTTAGCTGTGATTCTCACAGTCAGGCTTAGCCAGGAAAAAGCTgcgatgctaacagctggcctCGGTAGGCTTGGCGTgttttagctgtgatgctaactgtttttccAAGCTGGATTACTCTCTGATCGTTTGTGAGATCTACAACTTTCTGCTGAGTCGAGTCACTGCAGACCtctaaacttcatgtagcttcagaatttAATGGAATGGGTTTCAGTGGCCGAGCAGATCCATCCAAGCCTTACGTCACATATAGTTTAACATCTTTCTTATCCAAATATGGGCTCTGTTTCCAAGCAAGTTGTACCCTAAGGGAAGTGCTACTTCATGGTCGATTTACTTGCACTATCCCGTGTCTTTTggcttttggcatgtctgtgtagaGAGAGGGGTTTTTGTGGTGTAACTGTCTTTCTGATTGTGAAAGCAATTTAGGGATAAGCTGAAACTCAagctagttttatttttatttcgttttttcgatgaatgttttacttttaaattaatttaacagaAAGTAGCATTATTTAAGCAAATCTATTCTGAATGTCACTGGCAGAATATCGTATGTGCCTCATTCTTTTACAAAATTCATAATAGAATTAAATTCTAGTCTAAATGCTgtgttttatgctgtttttttttttaataaatctgcCAACCctccattatttttttcctcatatACTGCAGTAGTATTGCGATGGCTGCACTTTATCCAGTTCTAAagccttaaatacctttttgcCTTGAAATGCATTGACTATCTTGAGTCACACACCGCACTAAGTAATGTCTTTTAGCTGAtctctcctcttcttttctcaatTCTCTGCCTGTTTGGACTGGTGCCTTTTCAATCTGTCTATTAAAGATTCTTTCTGTCA
>XM_022664968.1
TATGTGAATTATAGCTTCAGAACAGTACAGTGTAgaacagtgcagtgggcggcTTACAGGGCTGCGTCCCccctttttaaagtaatttcacAAACCCACTGCTCACACGGATTTGCACATTTACTGGATCCGGTTTTTAGAGCCTGATTTCAAATGAATATCGAGGACGAGGGGCCGAAATATGGTGAGCCCAGAAAATATGACCCCAACTTCAGAGGACCCATTCAGAACAGAGGATGTACAGACATAATATGCTGTATTTTCTTCATCTTGGCCATAGTGGGATATGTCGCTGTGGGAATAGTGGCATGGTCTCAGGGGGATCCCAGGAAGGTGATCTATCCCACAGACAGTATGGGACAGTTCTGTGGGCAGGTTGGAACTCCTCTGGAgaaAAAACCCTTCCTGTTCTACTTCAACATCCTGAAATGTGCCAGTCCTGTGGTCCTTGTGGAGTTTCAGTGTCCAACCACTCAGCTGTGTGTGGAGGAATGCCCCACTCGCTCCATGACCCTGGTGCAGGCCAAGGCTCCTGGAGGCGACTGGAGCTACTATAAAAAGTTCTGTAAGGACGTTTCAGATACAGAGACCGTTCCAAACATCTTGGCAAAGCGGCTGTGTCCTGCAATGCTCATCGCTAGCAAACCCTtcaCCCGGAGGTGTTTCCCAGCTCTGGGTCTGAAGGGCGATGAGGTCACTGTAGGAAATAAAACCACATTTAATGACGGACAGAGCGACAGAAAGGCCAGCGACCTCCTGCCTGCAGTGAAGAATGCCACAATAGTGATGGAAACTCGtctggtggtgatgaagatctTTGAGGATTTTGCACACTCATGGTATTGGATCGTTACTGGTCTGGTGATAGCAACTGTCCTGAGTCTGATCTTCATCGTGCTGCTGAGGTTCCTGGCTGGTATAATGGTCTGGGTCATGATTGTCCTGGTGATCCTCGTCATCGGATACGGAATCTTCCACTGCAGCATGGAGTACGTTAATCTGAAGAACGCCCCCGGTTCGAACGTCACCCTTAAGGAGCTGGGCTTCCAGATGGACCTGACTGTGTATCTCCACATCAGACAGACCTGGCTGGCTTTCATCATCATTCTGGCCATAGTGGAGGTGGTGATCATCCTGCTGCTCATCTTCCTCAGAAACAGGATAAGAATCGCCATCGCTCTCATCAAAGAGGCCAGCAAGGCTATTGGTCACGTGATGTCCTCCCTGTTTTACCCCCTGTTCACCTTCGCCCTGCTGGCTGTGGTTATTGCATACTGGGCCATCACTGCTGTCTTCCTGTCTACATCTAATGAACCAATATACAAAATCTTCAACATGGGCAATAAGGAGTGCATCTATGCAAACCAAACCTGCAATCCTGAGAACTACTCAAGGTCAGACATGAAGTTGGACTGCCCGGAGTCTCAGTGCCTTTTCGCTTTCTACGGCGGAGAATCCCACTACCACAAGTACCTCATCTTCCTCCAGTTCTACAAcgtcttcctcttcttctggtGTGCCAACTTCGTCATCGCCCTGGGCCAGATGACCCTGGCTGGGGCTTTTGCTTCGTATTACTGGGCGTTCAATAAGCCTCGTGACATGCCCACCTGCCCCGTGTTCGCCTCCCTCGGCAGAGCTCTCAGgtatCACACAGGCACTCTTGCTTTCGGCGCCCTCATCTTGGCAATCGTTCAGATAATCAGGGTTCTGCTGGAGTACCTGGATCACAAACTCAAAGGAGCTCAGAACAAGTTTGCCAAGTTCTTGCTCTGCTGCCTCAAGTGTTGCTTCTGGTGCCTGGAAAAGTTCATCAAGTTCATCAACAGGAATGCTTACATCATGGTGGCCATATATGGTAAGAACTTCTGCACTTCAGCCAGAGATGCCTTCTTCCTGTTGATGAGAAACGTGATCAGGGTGGCTGTTCTGGATAAGGTCACAGACTTCTTGCTGTTCTTGGGAAAACTCCTTATTGTGGGAATTGTggGAATCAtttcattcttcttcttctctggaAGAACGAAAGGACTGGATGTCGTACCCAATCTGCACTATTACTGGGTGCCCATTATGacgATTGCATTGGGCTCTTATCTAATAGCTCACGGCTTCTTCAGTGTGTATGGGATGTGCGTGGACACACTTTTCCTCTGCTTCTGCGAGGACCTGGAGCGTAACGATGGCTCTGCCGCCCGGCCCTATTACATGTCCAGCTCGCTGCGCGACATCCTCTTCAAGAACGTGGAGGATCCAGTCACCCGTTCTCCATCTTCACCTCAGGAAGAGGATGTCCCCCTGAGTACACGGAAGGAGTCCACGGAATGAGGCCGATGCACATTAGCGCTAAGCTGCCAGAAATCGTTTACTCTGAATCTGGATTTTTTGTTTCTGAAAAAAATGCAGTAGGGTTGCAGTGCATTAATTGAccataataatgataaacataattataaatGTGACTTATCACAGTGACCGATCACAGACTAATACATGTGCACTCGATAGTTGCTATGGGATTATAATGGGATTAAATGTCTGGAAATTAGTGCATTTTAGCTGTTTCtcagagctggattactcactgataTATGATGACAGCCTATAAATCCTGCAGTGGCAGGTTAGCTGTGATTCTCACAGTCAGGCTTAGCCAGGAAAAAGCTgcgatgctaacagctggcctCGGTAGGCTTGGCGTgttttagctgtgatgctaactgtttttccAAGCTGGATTACTCTCTGATCGTTTGTGAGATCTACAACTTTCTGCTGAGTCGAGTCACTGCAGACCtctaaacttcatgtagcttcagaatttAATGGAATGGGTTTCAGTGGCCGAGCAGATCCATCCAAGCCTTACGTCACATATAGTTTAACATCTTTCTTATCCAAATATGGGCTCTGTTTCCAAGCAAGTTGTACCCTAAGGGAAGTGCTACTTCATGGTCGATTTACTTGCACTATCCCGTGTCTTTTggcttttggcatgtctgtgtagaGAGAGGGGTTTTTGTGGTGTAACTGTCTTTCTGATTGTGAAAGCAATTTAGGGATAAGCTGAAACTCAagctagttttatttttatttcgttttttcgatgaatgttttacttttaaattaatttaacagaAAGTAGCATTATTTAAGCAAATCTATTCTGAATGTCACTGGCAGAATATCGTATGTGCCTCATTCTTTTACAAAATTCATAATAGAATTAAATTCTAGTCTAAATGCTgtgttttatgctgtttttttttttaataaatctgcCAACCctccattatttttttcctcatatACTGCAGTAGTATTGCGATGGCTGCACTTTATCCAGTTCTAAagccttaaatacctttttgcCTTGAAATGCATTGACTATCTTGAGTCACACACCGCACTAAGTAATGTCTTTTAGCTGAtctctcctcttcttttctcaatTCTCTGCCTGTTTGGACTGGTGCCTTTTCAATCTGTCTATTAAAGATTCTTTCTGTCA
>XM_022664969.1
GGAAGCTGATCGGTGGAGATAGGGTGGAGGGTGGAGGCTCGGTCTTGCGGTGGAAGCGCTTTATTCCGGGTTAAACATGGCAGAGGAGGACGATCATTACGGGAAACACGGTGAGCCCAGAAAATATGACCCCAACTTCAGAGGACCCATTCAGAACAGAGGATGTACAGACATAATATGCTGTATTTTCTTCATCTTGGCCATAGTGGGATATGTCGCTGTGGGAATAGTGGCATGGTCTCAGGGGGATCCCAGGAAGGTGATCTATCCCACAGACAGTATGGGACAGTTCTGTGGGCAGGTTGGAACTCCTCTGGAgaaAAAACCCTTCCTGTTCTACTTCAACATCCTGAAATGTGCCAGTCCTGTGGTCCTTGTGGAGTTTCAGTGTCCAACCACTCAGCTGTGTGTGGAGGAATGCCCCACTCGCTCCATGACCCTGGTGCAGGCCAAGGCTCCTGGAGGCGACTGGAGCTACTATAAAAAGTTCTGTAAGGACGTTTCAGATACAGAGACCGTTCCAAACATCTTGGCAAAGCGGCTGTGTCCTGCAATGCTCATCGCTAGCAAACCCTtcaCCCGGAGGTGTTTCCCAGCTCTGGGTCTGAAGGGCGATGAGGTCACTGTAGGAAATAAAACCACATTTAATGACGGACAGAGCGACAGAAAGGCCAGCGACCTCCTGCCTGCAGTGAAGAATGCCACAATAGTGATGGAAACTCGtctggtggtgatgaagatctTTGAGGATTTTGCACACTCATGGTATTGGATCGTTACTGGTCTGGTGATAGCAACTGTCCTGAGTCTGATCTTCATCGTGCTGCTGAGGTTCCTGGCTGGTATAATGGTCTGGGTCATGATTGTCCTGGTGATCCTCGTCATCGGATACGGAATCTTCCACTGCAGCATGGAGTACGTTAATCTGAAGAACGCCCCCGGTTCGAACGTCACCCTTAAGGAGCTGGGCTTCCAGATGGACCTGACTGTGTATCTCCACATCAGACAGACCTGGCTGGCTTTCATCATCATTCTGGCCATAGTGGAGGTGGTGATCATCCTGCTGCTCATCTTCCTCAGAAACAGGATAAGAATCGCCATCGCTCTCATCAAAGAGGCCAGCAAGGCTATTGGTCACGTGATGTCCTCCCTGTTTTACCCCCTGTTCACCTTCGCCCTGCTGGCTGTGGTTATTGCATACTGGGCCATCACTGCTGTCTTCCTGTCTACATCTAATGAACCAATATACAAAATCTTCAACATGGGCAATAAGGAGTGCATCTATGCAAACCAAACCTGCAATCCTGAGAACTACTCAAGGTCAGACATGAAGTTGGACTGCCCGGAGTCTCAGTGCCTTTTCGCTTTCTACGGCGGAGAATCCCACTACCACAAGTACCTCATCTTCCTCCAGTTCTACAAcgtcttcctcttcttctggtGTGCCAACTTCGTCATCGCCCTGGGCCAGATGACCCTGGCTGGGGCTTTTGCTTCGTATTACTGGGCGTTCAATAAGCCTCGTGACATGCCCACCTGCCCCGTGTTCGCCTCCCTCGGCAGAGCTCTCAGgtatCACACAGGCACTCTTGCTTTCGGCGCCCTCATCTTGGCAATCGTTCAGATAATCAGGGTTCTGCTGGAGTACCTGGATCACAAACTCAAAGGAGCTCAGAACAAGTTTGCCAAGTTCTTGCTCTGCTGCCTCAAGTGTTGCTTCTGGTGCCTGGAAAAGTTCATCAAGTTCATCAACAGGAATGCTTACATCATGGTGGCCATATATGGTAAGAACTTCTGCACTTCAGCCAGAGATGCCTTCTTCCTGTTGATGAGAAACGTGATCAGGGTGGCTGTTCTGGATAAGGTCACAGACTTCTTGCTGTTCTTGGGAAAACTCCTTATTGTGGGAATTGTggGAATCAtttcattcttcttcttctctggaAGAACGAAAGGACTGGATGTCGTACCCAATCTGCACTATTACTGGGTGCCCATTATGacgATTGCATTGGGCTCTTATCTAATAGCTCACGGCTTCTTCAGTGTGTATGGGATGTGCGTGGACACACTTTTCCTCTGCTTCTGTGAGGATCTGGAGCGGAACGATGGCTCCGCGGAGAGGCCGTACCTGATGCCCGACAGCCTCCTCAAAATCCTgaacaagaacaacaacaaGGCTAAAGTAGCAGATTAGCTGTGGAACACAGAGCTCTGCCTCCTGGTGTTCAGAAGAAAATGCACGTGCAGCACAGAACACAGGAGGAAGTGGTCATATCCAAGCCAAAGTGAACGTGTGCAGTTTAGTGCCTTAAACAGAAATGACCAAGAGTGCCAAGAATGCTTTAGGCCTGATTAAGATATGAATACTagtacatctaaaaaaatatagaatatcattgaaaaatcactttatttcagtaattcagttcaaaatttgCAACTTATATGTAAAATTgggttacagtttttttttttaattagtgtagatttttttcccacaaaatcttacagcacttcatgcttccctttgctgacaa

Function

NR:

description
PREDICTED: choline transporter-like protein 2

GO: NA

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664967.1 False 3438 mRNA 0.46 22 3717089 3761747
XM_022664968.1 True 3511 mRNA 0.46 22 3704804 3761747
XM_022664969.1 False 2540 mRNA 0.48 22 3717090 3766487

Neighbor

gene id symbol gene type direction distance location
LOC111191046 NA coding upstream 53469 3645713 ~ 3651335 (+)
farsa farsa coding upstream 83977 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 109433 3574633 ~ 3595371 (+)
LOC103038127 LOC103358682 coding upstream 301241 3362434 ~ 3403563 (+)
LOC111191052 NA coding upstream 347564 3346445 ~ 3357240 (+)
LOC103046751 LOC108432062 coding downstream 10036 3776523 ~ 3825640 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 313662 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 556624 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 590500 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 601231 4367718 ~ 4392866 (+)
G297318 NA non-coding upstream 7274 3693698 ~ 3697530 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding upstream 40225 3661243 ~ 3664579 (+)
G297218 NA non-coding upstream 292719 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 293992 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 329070 3346094 ~ 3375734 (+)
G297369 NA non-coding downstream 11419 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 60281 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 99453 3865940 ~ 3886107 (+)
G297377 NA non-coding downstream 120212 3886699 ~ 3988115 (+)
G297387 NA non-coding downstream 174069 3940556 ~ 3954908 (+)
LOC103030733 NA other upstream 64190 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 556201 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2342869 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2414384 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2504016 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 486529 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 653510 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 884156 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1936025 5702512 ~ 5711874 (+)

Expression


Co-expression Network