LOC103046751 (LOC108432062)


Basic Information

Item Value
gene id LOC103046751
gene name LOC108432062
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3776523 ~ 3825640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664970.1
AGGAGCGCAAAGTGGGAGCAGAGCGGTGATCTGCGCGTCTTCATACCGAGCAGGAGGCACTTCTCCCGGCCACGCAGAGTCCTGACTCCCGCCAGCAGCTCCGGACTGAGCTCAGAACCAGCCGAGCAGATTTTATTCAGATATAAAGCGAGTTTAAACCGAAAACAAACGCGTTTCATTAATAAAAGACACTTTTTAACGTTAATTATCGAGTTTTCTATCGACACCTGTATCTAGTGTTCAGAGACACCGCAGTATGGAAGCTTTTACCCTGTAGGAGGAGAATCTGAGGAAAGCTGGACCTGAGACATGGGAAAATGGGAGTTAACCATGGATCCAGTTCAGGAGTGGGGTGAGGAGTTTGAAGATGGCGCTGTGTTTGGTATCACGCTGCGCAGAGAGCCGGTTCAGCAGGCGGGCGAGGGCCCGGAGTCCTGCCCCTGCTCCGGGTTCGTTCAGTACCGCACCTGTAAAGTACGGAGGCTGAAAGCGGCCACTCTGGAGCGGCTGGTGGCTCACCTGTTCGACCCCTGCTGTCAGGAACAGGACTACGGGAGGATCCTGCTCTCCACCTACCGCACCTTCACCAGCTCCAACCAACTCATCCAGATGCTCTTCCAGAGGGACAGTCTTGATGAAGAGTTGGACAACAGCAAGTGTCATAACAGctCTCTGTGGACGTTGCTCCAGATCTGGCTGGATGAGTTCGCTGAGGATTTCAGGGACTCTCCGATGCACTCTTCTTTACGCCTGATGTGTCTTGAGCTCAGAcgtcatccctctctctctcctctggctAAGCACTACGAGGCTCTCCTCAGGAGGTTCCAGTCAGAAGATGTTGTGAATAATGAGCAGGATGGTCTGGGAGATGATCCAGTGGCGGCTCAGAATGAAAAGGACTCGGACGAATCGGACGATTCAACCAATCAGACAGACTTCATGGATTTCTCCACTGCAGGACTGGCTGAGCAGCTCACCAGGCTGGACACTGAGCTGTTTGTGAAGGTGGTGCCGTTCCAGTGTCTGGGCTGTGTGTGGTCTCAAAGAGATAAGAAGGAGAATCTGTCGCCCACCATCCGCGCCACCATCGCCCAGTTTAATGCCATCACTAACAGAGTTATCACTTCACTGCTCTGTCCTTCCTCCTGTCCTCCGTCCAGCCCACAGTCTGCCGTCACTCAGAGAGCCAGAATCATTGAGAAGTGGATACGAGTTGCACAGGAGTGCAGACGTCTGAAGAACTTCTCCTCCCTGAGGGCCATCCTCTCCGCCCTGCAATCCAACCCCATCTACAGGCTGAGGAAGACATGGGCTGCAGTCAGCAGGGAGAGCTTGAGTATCTTTGAGAACCTGTGTGAAACTTTCCCTGATGAGAACTGTGTGCTGACCAGCAGAGAAATCCTTGTGGAGGACGGAGGCCAGGCAGCTGTGGAGAACGTTTCTCCCCGGACGTCTAAACGCTGCGCTGTATCCAGACAGATGAGCTCCACCAGCGGAGCTGTGCCTTACCTGGGAACCTACCTGACCGTGCTCACCATGCTGGATACGGCTCTGCCCGACACTGTGGAGTGCGGCCTCATCAACTTTGAGAAACGCAGACGGGAGTACGAGATTCTGTATCAGATCCGTCAGCTGCAGACGTCCTGCTCCCAGTACCTGTTGCCTCACCACCCTCAGATTTCTGCCTGGCTCCAGCGTCAGAGACTCCTCACTGACCAGGAGAGCTACGAGTTATCCAGAGAGCTGGAGCCGCCGCTGGACACCAGTCCTCAGCCCAGCAGCGGAGCCTGGAGTCACCGGGTCCTGACCAAGAAGCTTTCCTCCCTGCTGAATGTGAGTGACGGCTCGAGAAAGAATGCTGACCAGATTAGTGTTTCATCATCTGGATCCAGCAGCTCTGAGATGGAGGATCTCTCCACCAATCAGTCGTCTCCTCTCGGAGCACAGTCTCTCTCCAGCTCCTGCCAAAACATGGCCGATGCTTCTTCTCACTCCTCTACTCCTTCTTCGGACTCCTCCAGCTCCTCGCCCGTCTCCAAGAATGACCTCATACTTCCTccagcctcctcctcctcctcttcttcttcttctccatcCAAACTCGGCCATAAGCGTTCAGTCTCCATGACCTCCCTGCCCCTCTACAACAGACAGGTGGCCGACTCCTGCATCATCCGGGTCACGGTGGAGCGCGGCAACAACGGCAACATGTACAAGAGCATCCTGTTGACGAGTCAGGATAAAACAGCCCAGGTGATTGAGAGAGCTCTGCAGAAGCACAACCTGGAGAACACCAGTGTTCAGGACTTTGCACTGATCCAGATGCTGCCGCAAGGAAAAGaactaGTCATTCCAGACAAAGCCAACGTGTTCTACGCCATGTCCACGTCAGCCAACTACGACTTCGTTTTGCGGCAGTACGCTAAAGGCCATCGTAAACAGCTTGCACGCTCTGTGTCGATGTCAGCGGGCCGGTGCTCCAAATAACAGCGCCCCCTACTGCTGTGGAGACATCTGCACTAGAAGAAACGAAGAAACTTGGAATACTGCACAagattttttgcatattttgcaACAAAGCAATTTTGTACAATGTGTAGATagttgtaatatatatttatttaatgcgCTTTATGAAggactatttttatatatatatataaatataaatataaatgatccATTAGACCAACTTGCCTTGAACGTGTGAGTGTGGGCTGAggcacttaaaggagaactccagtgtaaaatggagttttgttgcagtaaaacatgataaaaaggaCTTacatttga

Function

NR:

description
PREDICTED: ral guanine nucleotide dissociation stimulator-like 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664970.1 True 2799 mRNA 0.52 18 3776523 3825640

Neighbor

gene id symbol gene type direction distance location
LOC103025262 LOC108432064,LOC108256459 coding upstream 10036 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 125188 3645713 ~ 3651335 (+)
farsa farsa coding upstream 155696 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 181152 3574633 ~ 3595371 (+)
LOC103038127 LOC103358682 coding upstream 372960 3362434 ~ 3403563 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 254509 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 497471 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 531347 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 542078 4367718 ~ 4392866 (+)
epor NA coding downstream 576000 4401640 ~ 4414691 (+)
G297318 NA non-coding upstream 78993 3693698 ~ 3697530 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding upstream 111944 3661243 ~ 3664579 (+)
G297218 NA non-coding upstream 364438 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 365711 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 400789 3346094 ~ 3375734 (+)
G297367 NA non-coding downstream 1128 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 40300 3865940 ~ 3886107 (+)
G297377 NA non-coding downstream 61059 3886699 ~ 3988115 (+)
G297387 NA non-coding downstream 114916 3940556 ~ 3954908 (+)
G297394 NA non-coding downstream 186137 4011777 ~ 4133864 (+)
LOC103030733 NA other upstream 135909 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 627920 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2414588 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2486103 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2575735 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 427376 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 594357 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 825003 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1876872 5702512 ~ 5711874 (+)

Expression


Co-expression Network