LOC103025443 (smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874)


Basic Information

Item Value
gene id LOC103025443
gene name smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3228458 ~ 3326996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664974.1
TAGGCAGTGACGGACTTTAGGCAGTAGGGTGTTCAGCTCCCTAGTAGCAGTGTCTCCCTCTCTGCTCAACTTTTCCCCCAGGCTTATACTCAGTCCTCCTCACTGAATGGGCTCAGGAGAGGCGCGTACAGCTCCATCAAACCCGATACTCCGTTTTAAACCGATTTATCACCGTCTAAACAGCTTTTTAACCTGAGAAAACTGCACGTAGCTAGTGTAGAGAGTGAGTGGACATGGCTCCAGCAGCGGCTCCGTGCACATCCGGGCCACAGCGCAGCGCCTCCATTATTATTCCCAGCTCactgtgagtgagagaaagcggcCAGGCTGGCTCAGCGCAACGAGCAGAAAACgggcaataaaaaacaaaccgGGGCTTTAACACGGGATTTCTCCGACCAAGCTGGAAAGATAAGGGACATGTCTAATCAAGGGGGAAGGAGAAACGGGCCTGTGAAGTTGCGTTTAACAGtgctgtgtgcGAAGAATCTGGCGAAGAAAGACTTCTTTCGCCTGCCTGACCCCTTTGCTAAGGTGGTGGTGGACGGTTCCGGGCAGTGCCACTCCACAGACACAGTCAGAAACACTCTCGACCCCAAATGGAACCAACACTATGACCTatACATCGGGAAGTTGGACTCCATCACTATCAGTGTTTGGAACCATAAGAAGATCCACAAGAAGCAGGGCGCCGGCTTTCTGGGCTGCGTACGGCTCCTCTCCAACTCCATCAACCGCCTCAAAGACACTGGCTATCAGAGACTGGACCTCAACAAGTTGGGACCCAATGACAGTGACACCGTGAGGGGCCAGATAGTAGtGAGCCTGCAGTCCAGAGACAGAATCGGAAGTGGTGGGCCGGTGGTGGACTGCAGTCGTCTGTTTGATAATGATCTACCTGATGGctGGGAGGAGAGGAGAACTGCATCGGGTCGAATCCAGTACCTGAACCACATCACACGCAGCACGCAGTGGGAGAGACCCACCAGGCCGGCATCAGAGTACTCGAGCCCCGGTCGGCCGCTCAGCTGTCTGGTGGATGAGAACACTCCCATTATGACCCCTAATGGTGCAGCAGGTGTGCAGGCTGGTGACCTGCGGGTTCAGGAGAGGCGCGTCCGCTCCCAGAGACACAGAAACTACATGAGCCGAACTCATCTCCACACTCCTCCAGACCTACCCGAGGGCTACGAGCAACGGACCACACAGCAGGGTCAGGTGTACTTCCTGCACACCCAGACAGGAGTCAGCACGTGGCACGACCCCAGAGTACCCAGggaTCTGAGTAATGTGAACTGTGAGGAGTTGGGACCTCTGCCTCCAGGCTGGGAGATCAGGAACACAGCCACAGGCCGGGTTTACTTTGTGGACCACAACAACAGAACCACGCAGTTCACTGACCCACGACTCTCGGCCAACCTGCACCTCGTCCTCAATCCCAGTCCTAATGGTTCCCGTAGTGCAGGCGAGGCTCCAAACAGgaAAAAACTGTCCCTAAATATAGAGCTCAGGTACTACCTGACCCTACCTACTGAATCATACCGCCAAGTGATGAAGATGAGGCCAAAAGACTTGTGGAAGAGGCTGATGGTGAAGTTCAGAGGCGAGGAAGGTCTGGACTATGGAGGCGTGGCCAGGGAGTGGCTGTACCTCCTCTCTCACGAGATGCTGAATCCATACTACGGGCTCTTCCAGTACTCACGAGATGACATCTACACTCTACAGATCAATCCAGACTCCGCCGTTAACCCGGAACACTTGTCCTACTTCCACTTCGTGGGCAGAATAATGGGCATGGCTGTGTTCCACGGCCACTACATCGATGGCGGCTTCACCCTGCCCTTCTACAAACAGCTGCTGGGCAAACCCATCACCCTGGATGACATGGAGTCTGTGGACCCTGACCTCCACAACAGTCTGGTCTGGATCCTTGATAATGACATCACAGGAGTGCTGGACCACACGTTCTGTGTAGAACACAACGCCTATGGGGAGATCATTCAGCATGAGCTCAAACCCAACGGCAAGAGCATCCCCGTCACCCAGGATACCAAAAAGGAATATGTCAGGCTTTATGTGAACTGGCGGTTCCTGAGAGGCATCGAAGCTCAGTTCCTGGCTCTGCAGAAAGGCTTCAATGAGGTCATACCACAACATCTGCTCAAGGCCTTCGATGAGAAAGAGCTTGAGCTGATTGTGTGCGGCCTGGGTAAGATCGACATAAACGACTGGAAGTCCAACACGCGGTTGAAGCACTGCACGCCCGACAGCAACATTGTGAAGTGGTTCTGGCGAGCTGTGGAGTCGTTCGATGAGGAGCGGAGAGCTCGACTGCTGCAGTTCGTCACCGGCTCCTCCAGAGTGCCGCTGCAAGGCTTTAAAGCCCTACAAGGAGCTGCAGGCCCACGTCTCTTTACCATCCATCAGATTGACGCCAACACCGACAACCTGCCCAAGGCCCACACATGCTTCAATCGCATCGACATTCCTCCATACGAGCTCTACGACAAGCTCTATGACAAGCTTCTGACAGCCATCGAGGAGACCTGCGGGTTTGCTGTGGAGTGATTGCGCTTGCGTTTGGAGGATGAGCCGCTTAGTGGGAGGAGTTGACCTGTCACTCGGGCCCAGATGGGGCGTGGCTTATGGTGCAGCAGCACCGCCCCTGTCATCAGAAGCAGGGAAAGGAGTAGGAGGAGTAAGAAGATGAGGGGGAACAGATGGAGTATCCTGCAGCATTCTATGCCTGATATGGGCTTTTCTCTGCATCCCTgcgtattttattattgtttttttttttttattattgttttttttattcaagagAAGAATGGACTTTTTCAGCTGCTAGTAACTCagactttttgactttttatCGTTTTTTGGAACATACAGCATAAAAACTACGGCTCTTCCtcttctgcttttctttttatagcattaatgaaacaaacaaaaaaagatatagaCAGTATTTCATGTAGCGTCTGTACCAACAACTGACTGAGGGAAAAGGAGGGACACTGACGGGATGCTGTGCTAACAGAGCATTGCTGCATAAGCTAACATAAGAGTAGCACTACTGCCCTTACTACAGATAAAacgacgagacgagacgagacgagacgagtgGAAGACGCAGATCAGTGACGCAGAAGGAGACTAAAAGCAGTTGCGTTTCTTGGTCACGTGGACTTGGAAGCCCTCGTGGTAGCAGGCCCTGTTCTTCTGAAGTAGTGGACGTATGGTGGACCTTTGGGGCCCAGATATGCCCTTGCAATCTACAGGGGCCCTGTGATAAAGGCACCTGTTAAGGGCCCTAGTATAAGTGCCCTACTATCCACTGTTCAAAGCCTGTAGACACCAGGAACCATCCTAACTACCTGTGCTCCATTCCGTAAGAGCAGTCTCATCAGCGGTCTGATGTATAAGCTTCTTTAAACtgaattgaatgaatgaatgaaagattgcttgatagatagatagatagatagactgactgattgattgattaattgattgattgattagttAGATTAGGTAGGTTAGTGATATTTTTATATGACGCAGGGTTGTGGGGGGGGAGGGGTAAAACAGAGAAATGAACAaccaaattattattgttatagaTCTATAATTTATTACCCTTATTGCAGAAAAACGTGTTGCAtccagagcaaaaaaaaagaaaaaaaaaacacgaaagaAGAATTTATGCATTATGCATTGCTTTGTCTAATGgatgatttatattttaagtttctcacagaaaaaaaaaaaaaa

Function

symbol description
smurf2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of BMP signaling pathway; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in membrane raft; nucleus; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human SMURF2 (SMAD specific E3 ubiquitin protein ligase 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase SMURF2

GO:

id name namespace
GO:0045121 membrane raft cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664974.1 True 3783 mRNA 0.50 21 3228458 3326996

Neighbor

gene id symbol gene type direction distance location
LOC103025752 kpna2,LOC108432045,LOC108261381 coding upstream 1287 3219929 ~ 3227171 (+)
LOC103026062 LOC108432079 coding upstream 12269 3165049 ~ 3216189 (+)
LOC111191042 LOC108432083 coding upstream 303273 2768664 ~ 2925185 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding upstream 539668 2549150 ~ 2688790 (+)
LOC111191061 NA coding upstream 550181 2674748 ~ 2678277 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 5883 3332879 ~ 3342234 (+)
LOC111191052 NA coding downstream 19449 3346445 ~ 3357240 (+)
LOC103038127 LOC103358682 coding downstream 35438 3362434 ~ 3403563 (+)
ilf3 ilf3,LOC107659573 coding downstream 247637 3574633 ~ 3595371 (+)
farsa farsa coding downstream 269531 3596527 ~ 3620827 (+)
G297190 NA non-coding upstream 9849 3217671 ~ 3218609 (+)
G297128 NA non-coding upstream 192844 3034512 ~ 3035614 (+)
G297126 NA non-coding upstream 207301 3020513 ~ 3021157 (+)
G297116 NA non-coding upstream 248087 2980093 ~ 2980371 (+)
G297063 NA non-coding upstream 296541 2929187 ~ 2931917 (+)
G297214 NA non-coding downstream 19098 3346094 ~ 3375734 (+)
G297217 NA non-coding downstream 21746 3348742 ~ 3410812 (+)
G297218 NA non-coding downstream 84260 3411256 ~ 3412085 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 334247 3661243 ~ 3664579 (+)
G297318 NA non-coding downstream 366702 3693698 ~ 3697530 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 79855 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 1866523 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1938038 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2027670 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2394400 826378 ~ 834058 (+)
LOC103030733 NA other downstream 223331 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 926020 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1093001 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1323647 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2375516 5702512 ~ 5711874 (+)

Expression


Co-expression Network