LOC103044572


Basic Information

Item Value
gene id LOC103044572
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1334340 ~ 1350920 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664982.1
GTGGAGTGTTGAGCCTGAGTTTGAGTTTGGTCTCTATGAGAACATGGCGTGGACAGACCCAACAACACAGCCGCAGTTTCAGTACCAGGATTTGTCAAACGTCCAGTTCGTTCAACAGCCAACTCCTCAACCTGTAACAATTCTCCAACAGCTGCCTGCAGCAGTGGCTTCACCTGTACCATCCCTGCACCCAGGACACATCAGAGAGGATCTTGTAGAGCTGATGATGATGCAGAATGCGCAGATGCACCAGGTCATCATGAGCAACATGACCATGTCTGCTCTGAGTACGTTCGGCTACACATGTTCACCTGAGCATTTAGGTCCACCTGTAGCAGCTGAGGATGATGCAGAGGTGTTCCATCACTACTACCCATATAACCCTGCATTATCTCACTCCGTGTGGATGCCTCCACTGACTGGTCCTCAGATCCCTCAGCTCCAGACCATTCCAAGCTTTCACCACCCTTCTGACCCtctgcacactgcccacacacagcacaggGAGCGGAGCGCTGtaccacccccaccccctcgCAGTGTGACCGGAACTGTTGGAGCTGAAGTCCCTCCTgttacagacATTTACGAAGCAGAGAGAAGACAACATGAAACAGAAGAGACGCACAGAACTGATGCATAACCAACTATACCACCCACACAATACAGAAATGAGTGTATTGAATGAACTCCACACATATGTGCATATATTAAAATAGAGTCAATGCATTATAACATGTATAATTATCcttctgcatttttattttgcacATGTTTGTGTGATTCTTCCGTCTGGGGGCCCTTTTTATCATCTTAAAAGGTAACATTTTACCATCATTAAAGGTAACAATGACAAGACAATGCTAGCATGCTTTTAGTTAAAGACTTAGTAATATAGCCAAGAttatacataaattaaatatggaCCACTGTCAATAATGTCACTACTGACAGTTGGCCAGCAGGTGGCGATATTTACCTTTACATCAGTTCTTGTCCTGTTAAAGGAAAATCTTCAAAATCTTAGGGATATTAGATCAGAGTTTTGTAGTACAGTTATTAAGCATGTGTAGTcagttaatgtgtgtgtgaccAGTAATAATGTGATTAATGGCTCCATGAAAGTAGAAGAATTACAGAGAAAATATACCtaaattactcaaatataaaacaccatgaacatca
>XM_022664983.1
GGAAGTGGAGTGTTGAGCCTGAGTTTGAGTTTGGTCTCTATGAGAACATGGCGTGGACAGACCCAACAACACAGCCGCAGTTTCAGTACCAGGATTTGTCAAACGTCCAGTTCGTTCAACAGCCACTGCCTGCAGCAGTGGCTTCACCTGTACCATCCCTGCACCCAGGACACATCAGAGAGGATCTTGTAGAGCTGATGATGATGCAGAATGCGCAGATGCACCAGGTCATCATGAGCAACATGACCATGTCTGCTCTGAGTACGTTCGGCTACACATGTTCACCTGAGCATTTAGGTCCACCTGTAGCAGCTGAGGATGATGCAGAGGTGTTCCATCACTACTACCCATATAACCCTGCATTATCTCACTCCGTGTGGATGCCTCCACTGACTGGTCCTCAGATCCCTCAGCTCCAGACCATTCCAAGCTTTCACCACCCTTCTGACCCtctgcacactgcccacacacagcacaggGAGCGGAGCGCTGtaccacccccaccccctcgCAGTGTGACCGGAACTGTTGGAGCTGAAGTCCCTCCTgttacagacATTTACGAAGCAGAGAGAAGACAACATGAAACAGAAGAGACGCACAGAACTGATGCATAACCAACTATACCACCCACACAATACAGAAATGAGTGTATTGAATGAACTCCACACATATGTGCATATATTAAAATAGAGTCAATGCATTATAACATGTATAATTATCcttctgcatttttattttgcacATGTTTGTGTGATTCTTCCGTCTGGGGGCCCTTTTTATCATCTTAAAAGGTAACATTTTACCATCATTAAAGGTAACAATGACAAGACAATGCTAGCATGCTTTTAGTTAAAGACTTAGTAATATAGCCAAGAttatacataaattaaatatggaCCACTGTCAATAATGTCACTACTGACAGTTGGCCAGCAGGTGGCGATATTTACCTTTACATCAGTTCTTGTCCTGTTAAAGGAAAATCTTCAAAATCTTAGGGATATTAGATCAGAGTTTTGTAGTACAGTTATTAAGCATGTGTAGTcagttaatgtgtgtgtgaccAGTAATAATGTGATTAATGGCTCCATGAAAGTAGAAGAATTACAGAGAAAATATACCtaaattactcaaatataaaacaccatgaacatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664982.1 True 1185 mRNA 0.43 6 1334344 1350920
XM_022664983.1 False 1159 mRNA 0.43 6 1334340 1350920

Neighbor

gene id symbol gene type direction distance location
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 257785 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 369901 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 375909 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 410054 911459 ~ 924286 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding upstream 424184 892095 ~ 910156 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 494060 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 1198230 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 1323828 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 1417744 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 1814129 3165049 ~ 3216189 (+)
G296768 NA non-coding upstream 33514 1296245 ~ 1300826 (+)
G296754 NA non-coding upstream 103790 1227395 ~ 1230550 (+)
G296660 NA non-coding upstream 223227 1110288 ~ 1111113 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding upstream 280771 965442 ~ 1053569 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding upstream 402744 928770 ~ 931596 (+)
G296791 NA non-coding downstream 22913 1373833 ~ 1375344 (+)
G296812 NA non-coding downstream 144298 1495218 ~ 1495445 (+)
G296831 NA non-coding downstream 199374 1550294 ~ 1550657 (+)
LOC111191056 NA non-coding downstream 233236 1584156 ~ 1584825 (+)
G296848 NA non-coding downstream 301747 1652667 ~ 1652888 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 43920 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 133552 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 500282 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1293449 36833 ~ 40891 (+)
G296790 tcap,LOC108413611 other downstream 8192 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1691512 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2199407 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2902096 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 3069077 4419997 ~ 4434071 (+)

Expression


Co-expression Network