LOC107197178 (syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782)


Basic Information

Item Value
gene id LOC107197178
gene name syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1371515 ~ 1388709 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664985.1
GCGCGGGTGGATAGCTTGACAGTACTGAACGCGTGAgcgcgcgcgcgcgcgtgtgtgtgtgcgcgtgtttACTCCGCGCGCGCTCTCTCCACCCTTCGGAcggaataagagagagagagaaagagagagaagagagggtgAGCCCCGACACCGGCTCTGAGAAATAAACTACtgtggaagagaaagagagagagatagagcggaggaaaaaaggaagaagggaaggagagagagagaaagagagaagactGTTTACCCCAGAAGACAACGGTTGCTTTTAATTTCCAAGGTCAAACCGTCCAGCCCGCAAAACCGTTAAACCGCACAGACGCGCTCAGAGACGGGGAGGTGACGGAGCAGCGCGCCGAGGATGGATCAGGCGTACGGAGCGGGCAAGGCTGGAGGAGCCTTCGACCCGCTGGCCTTCTTCCAGCAGCCGCAGACCATCCTGCGCCTCGTGTGCTGGATCTTTTCCATCGTGATCTTGGGCTGCATAGCTAATGAAGGTTATGTGAACCGGCCAGACGAGGTGGAAGAATACTGCATCTTCAACCGCAACCAGAATGCCTGTAACTACGGTGTGGCTATGGGCTCGCTGGCTTTCCTCAGCTGCGCAGCATTCCTGGCCCTCGATGTCTACTTCCCACAGATCAGCGGAGTCAAAGACCGCAAGAAAGCTGTCCTCGCTGACATCGGCCTCTCAGCATTCTGGTCTTTCATATGGTTTGTCGGGTTCTGCTTCTTGACAAACCAGTGGCAGGTGGCCAAACCAGAAGATAACCCCTTAAAAGAAGGTGCAGATGCAGCAAGAGCAGCCATcaccttctctttcttctccatCTTCACCTGGGCTGGTCTGGCTTTCCTGGGCTTCcagaggtacaaactcggagcAAGCTCCAGCCTCTTCTCCCAGGACTACGCTGACCCAAACCAGGACCCGTCAGCGGCGCCCGCTGCTGCCTCAGAGTACACAGGCTATACTGGGGATACAGAGATACCAGCCAATATGGATTCCTCTTATTATGACTCTGCTGGATACCAGAACCAGGACTACTAAGGTGGGTTGGTGTGGCCTGAGGGAAGACTCGTCCATTATAGCGATGGGAACCTTACAAGTCGAAGAATTCTGGACATTAGAGGACATTTGGTGGCTTTTTTGGGGGGTGAAGCCAAAGTTAGCTAATCAAAGACCTATGTGTGAAAAAAGCTCGGTAACTGTTTGGATATGGATCCTTATTAATGGGTTAATTAAAGGGGTTTAATCAGGAGTTGGAGTCTGTGTCCATGTTTGCAAGACAACTATttcatgtaaaacatttttttaaataataaaagaataggGATCTGA
>XM_022664986.1
GGAACAATCTGCTGAATGTTTCATCTGGTATTTGAACACATGATCTTTTCCATCGTGATCTTGGGCTGCATAGCTAATGAAGGTTATGTGAACCGGCCAGACGAGGTGGAAGAATACTGCATCTTCAACCGCAACCAGAATGCCTGTAACTACGGTGTGGCTATGGGCTCGCTGGCTTTCCTCAGCTGCGCAGCATTCCTGGCCCTCGATGTCTACTTCCCACAGATCAGCGGAGTCAAAGACCGCAAGAAAGCTGTCCTCGCTGACATCGGCCTCTCAGCATTCTGGTCTTTCATATGGTTTGTCGGGTTCTGCTTCTTGACAAACCAGTGGCAGGTGGCCAAACCAGAAGATAACCCCTTAAAAGAAGGTGCAGATGCAGCAAGAGCAGCCATcaccttctctttcttctccatCTTCACCTGGGCTGGTCTGGCTTTCCTGGGCTTCcagaggtacaaactcggagcAAGCTCCAGCCTCTTCTCCCAGGACTACGCTGACCCAAACCAGGACCCGTCAGCGGCGCCCGCTGCTGCCTCAGAGTACACAGGCTATACTGGGGATACAGAGATACCAGCCAATATGGATTCCTCTTATTATGACTCTGCTGGATACCAGAACCAGGACTACTAAGGTGGGTTGGTGTGGCCTGAGGGAAGACTCGTCCATTATAGCGATGGGAACCTTACAAGTCGAAGAATTCTGGACATTAGAGGACATTTGGTGGCTTTTTTGGGGGGTGAAGCCAAAGTTAGCTAATCAAAGACCTATGTGTGAAAAAAGCTCGGTAACTGTTTGGATATGGATCCTTATTAATGGGTTAATTAAAGGGGTTTAATCAGGAGTTGGAGTCTGTGTCCATGTTTGCAAGACAACTATttcatgtaaaacatttttttaaataataaaagaataggGATCTGA
>XM_022664987.1
CGCGGGTGGATAGCTTGACAGTACTGAACGCGTGAgcgcgcgcgcgcgcgtgtgtgtgtgcgcgtgtttACTCCGCGCGCGCTCTCTCCACCCTTCGGAcggaataagagagagagagaaagagagagaagagagggtgAGCCCCGACACCGGCTCTGAGAAATAAACTACtgtggaagagaaagagagagagatagagcggaggaaaaaaggaagaagggaaggagagagagagaaagagagaagactGTTTACCCCAGAAGACAACGGTTGCTTTTAATTTCCAAGGTCAAACCGTCCAGCCCGCAAAACCGTTAAACCGCACAGACGCGCTCAGAGACGGGGAGGTGACGGAGCAGCGCGCCGAGGATGGATCAGGCGTACGGAGCGGGCAAGGCTGGAGGAGCCTTCGACCCGCTGGCCTTCTTCCAGCAGCCGCAGACCATCCTGCGCCTCGTGTGCTGGATCTTTTCCATCGTGATCTTGGGCTGCATAGCTAATGAAGGTTATGTGAACCGGCCAGACGAGGTGGAAGAATACTGCATCTTCAACCGCAACCAGAATGCCTGTAACTACGGTGTGGCTATGGGCTCGCTGGCTTTCCTCAGCTGCGCAGCATTCCTGGCCCTCGATGTCTACTTCCCACAGATCAGCGGAGTCAAAGACCGCAAGAAAGCTGTCCTCGCTGACATCGGCCTCTCAGCATTCTGGTCTTTCATATGGTTTGTCGGGTTCTGCTTCTTGACAAACCAGTGGCAGGTGGCCAAACCAGAAGATAACCCCTTAAAAGAAGGTGCAGATGCAGCAAGAGCAGCCATcaccttctctttcttctccatCTTCACCTGGgGAGCTCTAACTTTTCTGGCTCTGGAGCGTCTAAAGCGAGTATCGTTTGAAGAGGAGTACGACAAACTCTTCACCCCTCAAACTCCTCCCCCTTTTGTTTAACATGCAACAGTATATCTACATCTGCTTACATCTGTGACATCTATTCTCTCTGTTTGTGGCATGATCCACTTTCACACTTTCTTAGTGTGTTTGTGCGGACTGTTGTATTTAAGAAGGACGACCACAGTACATATACACTTACTAACTGGATATTGGATCTGATCAGGTCTGTTCAATAATGGTGGATTGCATCAGGAGTTAAGTACAGTTAATACAGACTGTTACATAGGAAGAAATATTAATTCATGCAGATATTGCTACAGTGCACCAACGTGTccaaatagtttttttcttttggttgttttatttttagagtCACAATCAGGGATTAGTGACATCGGTTTTAAAAAAGACTATTTGTGTAACCTGCACTTTGTAGTTCAGTTAAATCAAAGTCTGTTCTGTGATTTGAttgggcaggtgtgaatacaGGTTTGTTTGTGGTAATAATTTGATCTGTCCTCAGTCTGACCCAACTATCATCTGGTTCGAGCTAAGTGGCTGtacaggtgcagtttaacctgatatattGTTTGGATATTTAATagagctatgaacaaatgccatTGTTCCTATGTGGTCTAAGgtgtaaaaacattaatttttgcTATATTCCCTGTTGTTTACTACAAAAACGAGACATAATATatggtttattttctttatgttGGTGAACTAATACATTTCTTTTGTACTCTTGTGGTTCTgaaatgattttatttgatttatttcatttatttcatttattgtattcagttttatttacagCTTTGACAAGTGTTCACATTTAGAATAACTGGACAAAAAGACGTAAACGTATACCCTGATGTAAAGTGATGTGGTCAAGTGATGCTAAAGCTGCTCTTACACTGTAAACAGTATGCACTGTGCTTGCTAGTTGGGTGCAAAAGTGGGAGGTAAGAGGTCATTTCTGTAGttaatagaaagaaaagaacattttgatttaggctatatatatgttttgtatattattGTACTTGTTGTACAGCTCTTTGTGTTCATAAATACATTGGAAAAAAAGCATTTCTCTGTGCTGACACATCCACTGCTTTCTTATTGGATACACTGAAACACAGCAAACGTTTAAACATTCAAGCTGTATTTGACACTGTGCAATATATGCAAGCCCAGCAATTCATTTCCATGGTTCAGTGTGAAAGCAGCTTAAGTCAGAAAGTACTGAAATTACTAAATTGTGTCTTATTTGTTCATAAACTGGACCAAGCTTCTCAAGAATGTGCTTTGCCTAATTTAGTCCTGAACACTGATCTCTTATCAGGTCATAACCCTGTGTAGGGACATGACCTTTTTCCTGTTTCTGCATCCACATCTGACCTCTAGAGGGCGCTGCCACATTACGATATTACTATGGCTGCTGCAATTATTCGCTTTGacttgagctgttttgtaaaatatatttcctTTATTTGATATCAGTATTATTGTATGAcctgatttcttatttttaggcATCATTCCAATCATATTTGTTTACTATTCAAAGTATCTTCTGTTCATACAACATACAACTACCTGCACTGCTGTTTTATAAGTTTATATCAAATCAAACTGTAACAGGTGGTCCATATCTAGTTGAAATATTGAAGTAAACATCtaaaaaatgatacatttaaGTCTGCATTGCTTATATTTTTAGACATTCCAAATCTTTGTATTGTAGTGCATTTGTCTGGCTTGACAGATtttgtgattattatatatGTGCTGCTCATTACCTccagttttttgctttttttattaaacagcataaaaaaatgcTTATCAGAAACTCCATTACATTCTGTATTGCAAATTGGTTCTGGATAAAGTGACTCAGATCTTTTA
>XR_002649323.1
CGCGGGTGGATAGCTTGACAGTACTGAACGCGTGAgcgcgcgcgcgcgcgtgtgtgtgtgcgcgtgtttACTCCGCGCGCGCTCTCTCCACCCTTCGGAcggaataagagagagagagaaagagagagaagagagggtgAGCCCCGACACCGGCTCTGAGAAATAAACTACtgtggaagagaaagagagagagatagagcggaggaaaaaaggaagaagggaaggagagagagagaaagagagaagactGTTTACCCCAGAAGACAACGGTTGCTTTTAATTTCCAAGGTCAAACCGTCCAGCCCGCAAAACCGTTAAACCGCACAGACGCGCTCAGAGACGGGGAGGTGACGGAGCAGCGCGCCGAGGATGGATCAGGCGTACGGAGCGGGCAAGGCTGGAGGAGCCTTCGACCCGCTGGCCTTCTTCCAGCAGCCGCAGACCATCCTGCGCCTCGTGTGCTGGATCTTTTCCATCGTGATCTTGGGCTGCATAGCTAATGAAGGTTATGTGAACCGGCCAGACGAGGTGGAAGAATACTGCATCTTCAACCGCAACCAGAATGCCTGTAACTACGGTGTGGCTATGGGCTCGCTGGCTTTCCTCAGCTGCGCAGCATTCCTGGCCCTCGATGTCTACTTCCCACAGATCAGCGGAGTCAAAGACCGCAAGAAAGCTGTCCTCGCTGACATCGGCCTCTCAGCATTCTGGTCTTTCATATGGTTTGTCGGGTTCTGCTTCTTGACAAACCAGTGGCAGGTGGCCAAACCAGAAGATAACCCCTTAAAAGAAGGTGCAGATGCAGCAAGAGCAGCCATcaccttctctttcttctccatCTTCACCTGGgGAGCTCTAACTTTTCTGGCTCTGGAGCGTCTAAAGCGAGTATCGTTTGAAGAGGAGTACGACAAACTCTTCACCCCTCAAACTCCTCCCCCTTTTGTTTAACATGCAACAGTATATCTACATCTGCTTACATCTGTGACATCTATTCTCTCTGTTTGTGGCATGATCCACTTTCACACTTTCTTAGTGTGTTTGTGCGGACTGTTGTATTTAAGAAGGACGACCACAGTACATATACACTTACTAACTGGATATTGGATCTGATCAGGTCTGTTCAATAATGGTGGATTGCATCAGGAGTTAAGTACAGTTAATACAGACTGTTACATAGGAAGAAATATTAATTCATGCAGATATTttgttttatttttagagtCACAATCAGGGATTAGTGACATCGGTTTTAAAAAAGACTATTTGTGTAACCTGCACTTTGTAGTTCAGTTAAATCAAAGTCTGTTCTGTGATTTGAttgggcaggtgtgaatacaGGTTTGTTTGTGGTAATAATTTGATCTGTCCTCAGTCTGACCCAACTATCATCTGGTTCGAGCTAAGTGGCTGtacaggtgcagtttaacctgatatattGTTTGGATATTTAATagagctatgaacaaatgccatTGTTCCTATGTGGTCTAAGgtgtaaaaacattaatttttgcTATATTCCCTGTTGTTTACTACAAAAACGAGACATAATATatggtttattttctttatgttGGTGAACTAATACATTTCTTTTGTACTCTTGTGGTTCTgaaatgattttatttgatttatttcatttatttcatttattgtattcagttttatttacagCTTTGACAAGTGTTCACATTTAGAATAACTGGACAAAAAGACGTAAACGTATACCCTGATGTAAAGTGATGTGGTCAAGTGATGCTAAAGCTGCTCTTACACTGTAAACAGTATGCACTGTGCTTGCTAGTTGGGTGCAAAAGTGGGAGGTAAGAGGTCATTTCTGTAGttaatagaaagaaaagaacattttgatttaggctatatatatgttttgtatattattGTACTTGTTGTACAGCTCTTTGTGTTCATAAATACATTGGAAAAAAAGCATTTCTCTGTGCTGACACATCCACTGCTTTCTTATTGGATACACTGAAACACAGCAAACGTTTAAACATTCAAGCTGTATTTGACACTGTGCAATATATGCAAGCCCAGCAATTCATTTCCATGGTTCAGTGTGAAAGCAGCTTAAGTCAGAAAGTACTGAAATTACTAAATTGTGTCTTATTTGTTCATAAACTGGACCAAGCTTCTCAAGAATGTGCTTTGCCTAATTTAGTCCTGAACACTGATCTCTTATCAGGTCATAACCCTGTGTAGGGACATGACCTTTTTCCTGTTTCTGCATCCACATCTGACCTCTAGAGGGCGCTGCCACATTACGATATTACTATGGCTGCTGCAATTATTCGCTTTGacttgagctgttttgtaaaatatatttcctTTATTTGATATCAGTATTATTGTATGAcctgatttcttatttttaggcATCATTCCAATCATATTTGTTTACTATTCAAAGTATCTTCTGTTCATACAACATACAACTACCTGCACTGCTGTTTTATAAGTTTATATCAAATCAAACTGTAACAGGTGGTCCATATCTAGTTGAAATATTGAAGTAAACATCtaaaaaatgatacatttaaGTCTGCATTGCTTATATTTTTAGACATTCCAAATCTTTGTATTGTAGTGCATTTGTCTGGCTTGACAGATtttgtgattattatatatGTGCTGCTCATTACCTccagttttttgctttttttattaaacagcataaaaaaatgcTTATCAGAAACTCCATTACATTCTGTATTGCAAATTGGTTCTGGATAAAGTGACTCAGATCTTTTA

Function

symbol description
syngr1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1).

NR:

description
PREDICTED: synaptogyrin-1-like isoform X3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664985.1 False 1351 mRNA 0.52 4 1371515 1388709
XM_022664986.1 False 927 mRNA 0.48 4 1371515 1385764
XM_022664987.1 True 2817 mRNA 0.41 4 1373381 1388708
XR_002649323.1 False 2775 misc_RNA 0.41 5 1373381 1388708

Neighbor

gene id symbol gene type direction distance location
LOC103043375 tcap,LOC108413611 coding downstream 9594 1359317 ~ 1361921 (-)
LOC103043996 LOC108413591 coding downstream 110527 1229707 ~ 1260988 (-)
LOC103043071 LOC103043071,LOC108413597,LOC107567049,LOC108279476,LOC107754724,LOC107660753,LOC107739409,LOC107689110 coding downstream 146533 1216514 ~ 1224982 (-)
tlk2 tlk2,LOC108413572,LOC107689079,LOC107552467,LOC107567040,LOC107660745 coding downstream 158666 1189492 ~ 1212849 (-)
mrc2 mrc2 coding downstream 187652 1110328 ~ 1183863 (-)
LOC103044891 fam171a2 coding upstream 4453 1393162 ~ 1493873 (-)
LOC103045206 LOC108413642 coding upstream 108320 1497029 ~ 1545937 (-)
LOC111191055 NA coding upstream 164697 1553406 ~ 1561400 (-)
LOC111191030 NA coding upstream 888657 2277366 ~ 2281361 (-)
trnat-cgu_5 NA coding upstream 892270 2280979 ~ 2281051 (-)
G296778 NA non-coding downstream 70691 1283584 ~ 1300824 (-)
G296774 NA non-coding downstream 98655 1225478 ~ 1272860 (-)
G296775 NA non-coding downstream 118572 1248647 ~ 1252943 (-)
G296742 NA non-coding downstream 262032 1061727 ~ 1109483 (-)
G296735 NA non-coding downstream 407145 961275 ~ 964370 (-)
G296810 NA non-coding upstream 82844 1471553 ~ 1479940 (-)
G296832 NA non-coding upstream 161585 1550294 ~ 1550606 (-)
G296860 NA non-coding upstream 268889 1657598 ~ 1657967 (-)
G296861 NA non-coding upstream 274110 1662819 ~ 1663064 (-)
G296865 NA non-coding upstream 319778 1708487 ~ 1709020 (-)
LOC111191047 NA other upstream 457204 1845913 ~ 1857822 (-)
LOC103037146 NA other upstream 1108506 2497215 ~ 2531502 (-)
G297195 kpna2,LOC108432045,LOC108261381 other upstream 1835498 3224207 ~ 3227171 (-)
G297334 farsa,LOC106601350 other upstream 2207778 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 2963906 4352615 ~ 4355768 (-)

Expression


Co-expression Network