LOC103033788 (slc4a1)


Basic Information

Item Value
gene id LOC103033788
gene name slc4a1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 864849 ~ 889789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664988.1
CTTTGCCTCTTTGCCAGTCTTGGGTCACTCCTGTACCGGAAAGCAGTTCGAAAGACTTGCTGCGGACCCCCGGACCCTAAAGGCCCTCCGGAAGCACCTGGACACAGGTTCTGTGTGAAGTTTTCTGAGAGTTCTGGGAGAAGCAGAAGGCCGAGCACAGTCCCTCCTGATGGAAACTGTGTTAACTTTTGAGGAGGACAATGACATGTCCTATGGGGACAATGACTCACCTCTAGCCTCTCCATTCAGCCTGAGTTCAGTGGGACATATAGGCAGCTATGACCTGGAGCAGAAcaggcaggaggaagaggaggaggaggaggagcagattGCTGAGACCCGCATTGTCACGAGAAACGCAGATGctgtgtGGAACAGAAACACCAATGCCACCACCAGAGGTGACTCTCAGGCATATGTGGAGCTGAACGAGCTGCTGGGAAACAAATGGCAGGAGACCGGCCGCTGGGTGGGGTACGAGGAGTCCTACAACCCTATCACTGGAGCATGGGGGCCCTCCCACGTCTCCTACCTCACATTCAAAAGCCTTATCCAGCTCCGCAAGGTCATGACCACAGGGGCGGTTCTGCTGGATGTGGAGGAGAGTGGTTTGTCAGGCATCGCTGAGAGAATAGTAAATGAACTTCTGGACAGGAAAGAGATTCGGCCATCCGACCGTGACACCCTGCTGAAGACGCTGCTGCAGAAGCGCAGTCAGACTGAAGGAGCTTCAACAACCACAACAGGCATTGACATGATTGAGATGCTGCACACCTACTCTGTCACTAAACagAGAGATGCAGCAGACAGTGTAGAAGCATCCATCGTGCTGTCCGGTGTGCTGGACTCTCTGCAGAAGCCAGTAGTGGCGTTTATGAGACTGAGGGATGCTATAGTGATGGACGGGATTCTGGAGTCTAATGTGCCCGTGCGCTTCATCTTCGCCCTGGTGGGCCCGACTCAGAGCGGCATGAACTTCCACGAGAGCGGACGAGCCATGGCTACACTGTTGGCTGACTGGGTCTTCAGTTTGGAAGCCTTCCTTGCCCAGAATGAAAAAGAGCTGACCAATGCAATTGCCGACTTCATGGACTGCAGCATCGTGATCCCACCCACTGAGATCCAGAGCGTGGCCATGCTGCAGCCAATCATCGGCTTCCAGAAGAGGATGCTGCGTGAGAGGCTCCGCCCAGCTGACACTCGCATCACCTTGGGGCAGAAGATTAAAGGGCCTGAGAAACCACAAGAAGATCCATTAGCCCGAACCGGATATCCATTTGGAGGAATGGTCAAGGACATAAAGCGCCGTTACAGGCATTACATCAGCGACTTCACAGATGCTCTCAATCCTCAGGTTTTGTCTGCTGTCATTTTCATCTACTTTGCCGCTCTCTCTCCCGCCATCACCTTTGGAGGACTGCTTGCTGATAAGACTGAACACATGATGGGCGTGTCCGAGCTGATGATTGCCACCTGCATTCAGGGAATTATCTTTTGCCTTTTTGCCGCCCAGCCAGTACTGATCATCGGCTTTACTGGACCGTTAATGGTGTTTGAAGAAGCCTTTTTTGAGTTCTGTAAGTCCCAGGGTGTCGAGTACATAGTGGGACGAATCTGGGTTGGCATGTGGCTGATTATCATTGCAGTGGTTGTGGTGGCAGCGGAGGCAAGCTTCCTGGTGCGCTTCATCTCTCGTTTCACCCAGGAGATCTTCTCCATCCTCATCTCTCTGATTTTCATCTACGAGACCTTCGCCAAGCTGATCAAGATTTTCAAAACTCATCCTCTGGTTCTGAACTACGAGCATTTAAACGAGACCCTGGACGATCCCTTCCACCCTGTGTTGGAGTTAACGAACGTCACGGATGAGCACGGCAACGTTACTCACTACCACCGCATACGTGAGAGACCCTACCCCAACACTGCCCTGCTCTCCATGTGCCTGATGTTTGGCTGCTTCTTCATTGCCTTCTTCCTCCGTCAGTTCAAGAACGGCATCTACCTCCCTGGCCCTATTCGTCGTATGATTGGAGATTTCGGTGTGCCTATCGCCATTTTCTTCATGATTGCTGTTGATGTCAGCATTGAGGATGCCTACACACAGAAACTGGTAGTGCCACAGGGGCTGACTGTGTCCAACACTTCTGCCAGAGGCTGGATTATTAACCCCATGGGAGAGAAGAAACAATTCCCTATATGGCTGATGTTCGCCTGTGTAGTCCCGGGATTACTGGTCTTTATTCTCATCTTCCTCGAGTCTCAGATCACCACGCTGATTGTGAGTAAGCCAGAGAGGAAGATGGTGAAGGGATCTGGCTTCCATTTTGATCTGCTCCTCCTTGTGGCTATGGGTGGAGCTGCCTCCATTTTTGGCGTCCCCTGGCTTAGCGCTGCAACAGTGCGATCCGTCACCCACGTCAATGCGCTAACCGTCATGACCAAAGGCCCCAAACCGGAGATCGAAAAAGTGCTGGAACAGAGGATTAGTGGAATTCTTGTGGCCGTTTTAGTCGGCGTATCCATTCTCATGGAGCCTATCCTGAAGAAGATTCCCATGACTGCTCTCTTCGGCATCTTCCTTTACATGGGTATCACATCTCTGAGTGGCATTCAGATGTGGGATCGCATGCTGCTCTTGATGGTGCCCAAGAAGTACCACCCATCTGATCCTTACGCCACTCGAGTTCAAACCTCGCGAATGCACCTCTTCACTGTGATCCAGATGGTGTGTCTAGGCATCCTTTGGGTGGTGAAGTCCAGCAAGGCCTCTCTGGCTCTGCCCTTCGTCATTATCCTCACCATCCCACTGCGGATGCTCCTTACTGGACGACTCTTCACTGTCATGGAGATGCAATGCCTGGACGCCGACGATGCCAAAGTGGTGCTGGATGAAGAGCCAGGCATGGACGTGTACGATGAATCCCCTTTTCCATAATTGACATAATTGACCACCCCACAATTCTTCTCAGTGCCTTTCTGAAACTATCAAGTGAATTACAGCTTTAATCCAACATCAAACAGGAACTTTCAGCTGatagtttttaaaactgttcatTCGAATTTTACTTTAGCCGTTTTGATGATCTGCAAACACACTTTCATTCCTTGCCTTCTCTCCTACCCTGCCCTGACATGAATATACATCCCATACCATGCTTCTCCACGCTTCCCCTCAccccaaaaacactgtttagctttcatcattttttttgtttgttttattgttcttttttctgttgttttgccTCTATGCAGTAGCTTAGCCCAGTGCAGCCAATGTGTGTGATTGAATCTAGTATTAATTTGCCAAAATATCACATTGTTCCTCCATTATGTCTGTCTGAATCAAGTTGTTTAACCACAATGTTTCAGGGAAAGATCACATCTGTAAATACTTTAGGCCAGAAGTTGAATGAATGTATCAGCATTTAGATAGATCATAGATATATTAAATACTTTGAGTGGGTTTGAAATGTGATTTATGTACAtttgcttttattgttttactaaCCTGACATTCAAAGTCatttaactattaaaatgttataaccCAATAA

Function

symbol description
slc4a1 Enables anion transmembrane transporter activity; ankyrin binding activity; and protein homodimerization activity. Involved in bicarbonate transport. Located in basolateral plasma membrane and cortical cytoskeleton. Is integral component of plasma membrane. Implicated in congenital hemolytic anemia; hereditary spherocytosis; hereditary spherocytosis type 4; malaria; and renal tubular acidosis. Biomarker of glucosephosphate dehydrogenase deficiency and hereditary elliptocytosis.

NR:

description
PREDICTED: band 3 anion transport protein

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664988.1 True 3557 mRNA 0.49 21 864849 889789

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 607846 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 853086 283 ~ 11763 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 2306 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 21670 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 59515 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 71492 961281 ~ 964439 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding downstream 146557 1036346 ~ 1076555 (+)
G296629 NA non-coding upstream 59722 804892 ~ 805127 (+)
G296616 NA non-coding upstream 150088 707871 ~ 714761 (+)
G296607 NA non-coding upstream 159780 636029 ~ 705069 (+)
G296612 NA non-coding upstream 170120 661308 ~ 694729 (+)
G296599 NA non-coding upstream 256542 608002 ~ 608307 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding downstream 38981 928770 ~ 931596 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding downstream 75653 965442 ~ 1053569 (+)
G296660 NA non-coding downstream 220499 1110288 ~ 1111113 (+)
G296754 NA non-coding downstream 337606 1227395 ~ 1230550 (+)
G296768 NA non-coding downstream 406456 1296245 ~ 1300826 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 30791 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 823958 36833 ~ 40891 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 301974 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 397727 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 469323 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2152643 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2660538 3550327 ~ 3640614 (+)

Expression


Co-expression Network