xylt2 (xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585)


Basic Information

Item Value
gene id xylt2
gene name xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5229044 ~ 5270102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664989.1
AATCATTGCTGAATGTAACCACGGGGGAAGGAAAGATGGTGGCGAGTACCCGAGTACAGAAGCTGCTCCGACGGTACAAACTCGCTATCGCCGCCGCGCTGACCATCCTCCTGATCCAGGGGCTGGTGGTATGGAGTCTGCGGAGCCTGGAGGAGGGAGAGGCGGAGCGGAAGTTCCGGCGCTCTAAGCTGCCTGATCACAATAATCAGGACCTGAAGCGAGACCCCGAGGCCTGGGAGCGGCAGAATGCCCTATCGGGAGGCTATAACAGCCGGTGGAAGCAGGGCTTGGAGCGGGCGGCCGTTACCCGAGCTCTCAGGAAGGGAGCTAAGCGGCGAGCTAAGACCTCCCTGAAGGACAATGGAGTAATGGCTCAGGTCGCCGGAGCGCCTGCCGACGGCGTGGCACCGTACGACCCGTCCAGCAGCCGAAACTTCACTGATCTGAGGACGGGGGAAGGAGGCAAGATCCCACTGGTTGTTCCAGGAGAACCGGGGAGCGTTGAAGGTGCCCCTCAGATACCCAACAGTGACTTTGTACCCAAATGTGATATCTCGGGCAAGGATGCCCTGTCCGCTCTGCACCGCGCCACCTCCAGACAGTGCCGGCAGGAGCTCGCCAACATCGTGTGCCAACACCAGGCTGGAGAGCTGATGCCACAGGCTCTGCCTCAGTTCTGCCCACAGCACGttctgTCCAGTGCTGCTCAGCAGATCGACATCATAGACAGTGATATATCTAAAGTGGAGAACCCGGTCCGGGTGGCCTTCGTACTGATGGTCCACGGCCGAGCCATCCGGCAGCTCAAGAGGCTTCTTAAAGCCATTTATCACAAAGACCACTTTTATTACATCCATGTAGATAAGCGCTCCAACTACCTGCACCGTGAAGTCCTGCAGATGGCGGAGCTGTATCCCAACGTGAGGGCCACGCCCTGGCGCATGGTCACCATCTGGGGTGGAGCCAGCCTGCTGAAAGCCTACTTGCGCAGCATGCAGGACCTGCTCTCCATGCTGGAGTGGAAGTGGGACTTCTTTATCAACCTCAGCGCCACAGACTTCCCGACCAGGACCAACGATGAGCTGGTGGTTTTCCTCTCGCAGAACCGCGACAAGAACTTCCTGAAGTCTCACGGCAGAGAGAATGCCAGGTTTATTAAGAAGCAGGGGCTGGACCGCCTCTTCCACGAGTGTGATAATCACATGTGGCGTCTGGGCGAGCGCACTATTCCCGAGGGGCTGGAGGTTTCGGgaggttctgattggttctcgCTGACGCGGCGCTTCGTGGAGCACGTGGTCACGTCTCAGGACGAGCTGGTGAACGGACTGAAGCAGTTCTACACCTACGCCCTGCTTCCTGCCGAGTCTTTCTTCCACACTGTGTTGGGAAACAGTCACATGTGCGACACACTGGTGGACAACAACCTGCGCGTGACCAACTGGAACCGCAAGCTGGGCTGCAAGTGTCAGTATAAGCACATCGTGGACTGGTGCGGCTGCTCCCCCAACGACTTCAAACCCACCGACCTCATCCGGATTCAGCAGCTGACCAGACCCACGTTCTTCGCCCGCAAGTTCGAGTCCACCGTAAACCAGGAAGCCATAGACATCCTGGACACCCACCTGTACGGGCACTACCCGCCGGGCACGCTGGCGCTGAAGGCTTACTGGGAGAGTCTGTTTGAGCGGGAGGACGGTGTGGGCACTCTCAGTGACGTGGCTCTGACTGCGTACTCCTCCTTCTTCAGACTGGGTCTGCGCAGCCAGGAGTCCGCCCACGCCAGCAGTGAGGCCTGCAGGTTCGAGGCCGTGGGCTACCCCGTGTCGGTGCATGTGTATTTCTATGACGAGCGTTTCCAAGGTTACCTGATAAGACAGGAAGTGCAGAGCGTGGTGTCTGGAGGCAGAGAGATGCTGGAGGTGTGGGCCGTTCCCCAAGCAACTCTACAGCTGGAGAGCAACCTGCACGAGTTCGAGAGGCTGAAGAACCTGGAGGTTGGAACAGAGTGGGACCCCAAGGAGAGAATCTTCAGGAACTTTGGAGGGGTGATGGGTCCTCTGGATGAACCTGTGGCTGTGCAGAAATGGGCTCGGGGTCCAAATCTCACAGCTACCATCGTGTGGATCGACCCGGCGCAGGTGGTGGCGGCTTCGTATGATATCAGCGTGGACGTGGAGGCCGAGTTCACTCAGTATAAGCCTCCTCTGCAGCATCCGCTCCGGCCCGGCGTGTGGACGGTCCGAGTGCTGAGGCTGTGGGAGCGGGTGGCGGAGTCGCGCTTCCTGGTGATGCCTCTGGCTTTTAAAGGAAGAGAACCTCTTCGCAAAGAAGAACACAGCTGGCTGCACGCAGGTCCTCCTGGTAACCTGTACATGGAGCAGGGCTTCCAGCAGCTGGCCCACGTGCTGAAGCTGCCCCCCATGGAACCTGCACTGCAGGAGGCCCAGAAGAAAGCCTCTCTGCTGGGTAAAGATCTGGAGGTCTGGGTGGACAGTTTGGTTGGAGGCTTCTGGGTGACGGGAGATATCTGCTCCAGCCAGCTCTCGCTGTGTCCCACCGTGGCACTGTGTGCAAAGACCACGTGGAGCTCCCTGTCTCCAGACCCCAAATCAGAACTGGGGCTGGTCAAAAGCAACGGGCGAATCAGGTAGCCCCATCAGGAGAGAAGTGGAGAGGGGAACACTAAAGAACTGCACAGTGAGTGAAGTACACAGTCGAGTGGGCGGGGCCTGTGATGAGTGATGTTTACGGGGTACAATGGATGACCGTTCCATTGCGAATGGAGTCCCTCAGGGGTGTATTCGAGGCCCCTTAACCTtccgtttttttctgttttgaggGATTTGTACAACGTCAGGGAGAATCTAGGAGAGCGCAGATTTGTTGATGATGTTTGCACATGAGGACAACCTGACTTTTTTGAGATTTGCGACTTTTTTGACTACGTGTCTCTTTGTTCAGAtgtcacacacaaaaaaaagttacgCTAAACGTTACAGTCTTGATTTAAGGTTCGTCCACGTACGTACAGTTTTGGTCCAAGAGGGTTTGATAATGGGAGATCTCTTCACCTCAACGGTTTCTcaactcttcttctttttttatttacaggacGATCAAAAGAATGAAAGTAAATGAAAGTGcacatttttcttctttatctgtatctgtaaaaGGCGTGGCCGAAACCTTTTGAAACCATTTGACGCTCTACTACCTGTTGAAGGCTAAAGTGGGCGGAGTCCTCCGGCCTGTATTTCTATGCTTATTTTGAAGCATTAATATCGGAACTTCACGAGCAGATGGATGAAGTGCACTTTACTGTAAGACAAAGGTCTTCTCTGTACCGTTCGGCGTTGGAGTTCAAAGTCACGAAGACGATGAAGTCACTGTCGAGGGCGGAGTCAGCTGACTCCGCTGCCTCCGCCCGTTATCATATTTCGAATGCTGCTGCTCACGGAGGCGCGTCTACCATCGCATGGATTCATTGTGTacagttcaagcagttcaagcgACTAAATGGACAGCGCCACTAATGACATCCGTCCATTAGAAGACCAGATTAAGACTGGTGTGATCAGTTTTGCATTGCTGTGGATGATTTTCactttggttttttttttcttttttttttttcttaaatgtcCATTACTGCAGAAAAGTACATCAGAGAGTTGTGAGGCACAGGCTGAATGCCCCtcttaatatacagctctggaaaaaataagaaaccacttcagtttctgaatcagtttctctgattttgctatttatagg

Function

symbol description
xylt2 Predicted to enable protein xylosyltransferase activity. Predicted to be involved in chondroitin sulfate proteoglycan biosynthetic process and heparan sulfate proteoglycan biosynthetic process. Predicted to act upstream of or within proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in pseudoxanthoma elasticum. Orthologous to human XYLT2 (xylosyltransferase 2).

NR:

description
PREDICTED: xylosyltransferase 2

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664989.1 True 3780 mRNA 0.54 11 5229044 5270102

Neighbor

gene id symbol gene type direction distance location
recql5 recql5 coding upstream 60529 5117580 ~ 5168515 (+)
gadd45gip1 NA coding upstream 155861 5071404 ~ 5073183 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding upstream 439361 4773643 ~ 4789683 (+)
xpo6 xpo6 coding upstream 458289 4734668 ~ 4770755 (+)
LOC103025123 fam173a coding upstream 496482 4726687 ~ 4732562 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding downstream 8060 5278162 ~ 5344518 (+)
LOC103026631 NA coding downstream 78273 5348375 ~ 5356879 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding downstream 145095 5415197 ~ 5451392 (+)
dnaja3 LOC108431932 coding downstream 386664 5656766 ~ 5666429 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding downstream 448967 5719069 ~ 5719464 (+)
G297634 NA non-coding upstream 26382 5169353 ~ 5202662 (+)
G297638 NA non-coding upstream 50306 5178355 ~ 5178738 (+)
LOC111191036 NA non-coding upstream 112234 5112380 ~ 5116810 (+)
G297614 NA non-coding upstream 166382 5062316 ~ 5062662 (+)
G297604 NA non-coding upstream 189997 5038775 ~ 5039047 (+)
G297656 NA non-coding downstream 91304 5361406 ~ 5403107 (+)
G297658 NA non-coding downstream 121218 5391320 ~ 5458441 (+)
G297660 NA non-coding downstream 125622 5395724 ~ 5398831 (+)
G297657 NA non-coding downstream 188447 5458549 ~ 5461512 (+)
G297679 pam16,LOC107695711,LOC106601835 non-coding downstream 192603 5462705 ~ 5466991 (+)
LOC111191039 NA other upstream 553423 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 794973 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 929597 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1588430 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2080441 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 432410 5702512 ~ 5711874 (+)

Expression


Co-expression Network