farsa (farsa)


Basic Information

Item Value
gene id farsa
gene name farsa
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3596527 ~ 3620827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664990.1
agtgtgagTGAGTGCTAGGCTAGCAGGGATCAGCATGGCGGACAGCGGGCTGCTGGAGTCGCTGCTGCGGCTGGTGGAGAAGGTGGATGGCGGGTTAGACAGCCAGGACGCGGTGGGAGAGCTTGGCGTGGAGCACCAGGCGGTGGTCGGGGCGGTGAAGAGCCTGCAGGCGCTGGGGGAGGTGATTGAGGCGACGCAGCGTTCCTCCAAACACTGGGAGCTGACcggagaggggagagagatatCTGAGCAGGGGAGCCACGAGGCCCGTGTGTTTAATGCCATTCCTGAAGAGGGTCTGCCCCAGAGCCAGCTCATGAAACTGCCCAGTGGTAAAGTGGGCTTCAGCAAGGCCATGTCCAACAAATGGATCCGCCTGGATAAAGCTCACGAAGGAGGCCCTCGTGTTTTCAGAACGGTGGAGAGTATTGAAGACACAGTGAGGGAGAAGCTGCAGCTGGTGAAGAATGGCAAGTCCTCTCAgctggaggagaaggagaagaatgAGCTGAAGAAACGCAAACTGCTCTCAGAAGTAACAATCAAGTCCTACTGGATCACCAAAGGCAGAAACTTCAGCACCACCATCACCAAACAGGAGACAGAACTCACCCCAGAGATGATAGCCAGtGGGAGCTGGAGGGACAAGAAGTTTAAGCCCTATAACTTCGAGGCGATGGGTGTGGCTCCAGACTCGGGTCACCTGCACCCTCTGATGAAAGTGCGGACGCAGTTCAGACAGATCTTTCTGGAGATGGGGTTCACCGAAATGCCCACCAATAACTTCATTGAGAGCTCCTTCTGGAACTTCGACTCTCTGTTCCAACCCCAGCAGCATCCGGCCAGAGACCAGCACGATACCTTCTTCATGTCTGATCCAGCACTGGCTCGTGAGTTTCCTCAGGACTACCTGGAAAGGGTGAAGAAGGTCCACTCTGAAGGAGGATATGGGTCACAGGGGTACAAGTATGACTGGAAGATTGAAGAAGCTCAGAAGAACCTCCTCCGGACACACACCACCGCCGTGAGCGCTCGCATGCTCTACAAACTAGCACAGCAGgagaaGTTCACACCAGTCAAGTACTTCTCTATAGACAGAGTTTTTCGCAACGAGACCCTGGATGCCACTCACCTGGCTGAGTTCCATCAGATCGAGGGCTTGGTGGTCGACTACGGTCTTACTCTAGGAGACCTCATGGGGGTCCTGCACCAGTTCTTCATGAAACTGGgAATCACTAAGTTGCGTTTCAAGCCCGCCTACAACCCCTACACTGAACCTAGCATGGAAGTCTTCAGTTATCATGAAGGACTAAAGAAATGGGTGGAAGTCGGTAACTCTGGGGTCTTCAGGCCTGAGATGCTCCTGCCTATGGGTTTGCCTGAGGACGTGTCTGTCATTGCCTGGGGGCTGTCCTTAGAGCGgcCCACCATGATCAAATACGGCATCAACAACATCCGTGAGCTGGTGGGGCACAAAGTGAACCTGCAGATGGTGTACGACAGTCCGGTGTGCCGCCTGGACTCTTAACGTGGACTCAGGGACCCTTAAGCCCGTCTCTTCAGGACCCTTTCATACTCAGACCTCATGAATTCAATAAGCATTCTGGATTGGTCCACGCTGTTACGCTCTGTGTATTCCTCACCAAAAACTCTCAGATACTCTACTCAATCATCTGCCTGTGTCCCAGTGATGGAGGAACTGAGTCTGATAGACATGTAGGATGATGTAAGGAAGCATGCAGAAGCGGTGAGATCTGCAATCAGTGTGAGGTGATGCTTGTCTGTGTATGTAAGATGTAAGATGGTTTGTTTGCATTGTTACAGCATGCTTTTTGGTTTATTGGCACAGAAAGTTATGAAGTAGTCATATTGTTacccttaaaggagaactcctggGTGTAAAATGGACTCTTGTTGTAGTAATACATGATataaagtacttacctttgatttAATAGCCCATCTCCTCTCTTGCAGCTGTCTGAGATCCAGTCATTTTATCATTATATACAAAGGCCAtatcggggcatattttgcccgataaatggctttttacaccgttatccagctcaaagtagctccacaccgaCTTtttagaatccggagagccctgagaTTTAAAACTAGGCGTTAATAACTTACAAAATGCACAAgaaccttattaaaaaccactgcttacatcccataacgctagcttcagctccgggAGCCGCCgctgtacagagtgctgggcaaaaagcacaaacttGCTGTATTTTAGAAAGCTATAGGAGAGcgaaggtgtgctattcatcaaaggtaaatactttttatcatgttttactacaacaaaaatccattttacaccagagttctctaTTAAGGCAGCCGCACACCGGACTTGACTTAGTGTACACGCGCGCACACTAATGTCACAGTTGCGCACCATTGTGAACCACTGCTTATAGAGTTGTAGATAagcataccgtatttttcacactacaaggcGCACCGTactataaggctcactatcaattaacgtctattttaagagacactataaggaacttctaagtCTCTTCTAGGTCTCACCACTTGGTGGTAGTGGGGAGTAGCTAACTaatttaagtaaagctaagccaagtaaacaaaactgtaaaaaaattagACTTtcattaatctacacagatttctctctgagaaaactgtttatttgggtgagtaaagagcttcagTTTATGTATAGTAAACTTAGATTCCcttatttctccagcactaaggctggagcattagcgttagcggctaactgctccagcagtgctagccggggcaaggagcaggctacagtccaaaaatattcacctctaaacagggaaatagcaagtgcagttagcgggtaatgctaatgctgctccagcagtgctagctgctATCTTAGGAGCATGCTACAGTccgaaaatactcacctctaaatagGGAAATGGATGTTAGCACTTGCCATTAATACCTTAATACCTGATtggtcgatttttgggaaaataaactgattttaagtgcgccttatagtgcgaaaatgaCGGTAGGTCAATTTCTCTGTGACgcaatttaattacaataaataaaagacaaaatgatacaacaaaaatatatcattttgcTGTGGGATGCATCAAACATTTAGCAGCTGAAAATTTGCTAAATAAAGCACTTTTGGTGTATCACTGATTAAGTTAAGTTGATAATCAACAATGATAAATGATTATGATAATTTGAcatattgcagtgtttcctccaatatttttttcatatagcAGTGGTAGCACTTTACTAGATTCCAAGacacagccaaaaaaaaaaaaaaaaactgtttaattttaGTGTAATTTATGACTTTTGGACTTTGGAAATGTtcataaaatgcaaaaattccAATATTACAATACAGACAGTTGGAGTAATCAGGTTTTACACAATTTATTGACGTCTTATTGACACTTTATTCAGAAGAAACACCCTCAGGGGCTCTATTAAAAAGGAGAAGCTGATCAATGAACTGATTCTATTAGATTATAATAAATTTAGGCTCCATTCAAATGTTGTCAGCTTGCAATACCACAACGTCTTCAATATAGACACGTCCTCAGTCTTCAGTGCTCTCATTTCAGCACTTCGTTACTTGTTACTCGGCGTGGTCCGGTGTGCGGCAGCCTTTCCACAGGTGCACTGTCTCAACCAACAGAtctgcatatcgtcgctgtccaacaCTTATCTAcaaaaaagcaactttacaggggagagaaaaaaccttgtaaacttttaatggaagataatgtatttctattggtccgtttatcaaaaaatgttggcacagtgtaagggacagtttgtctgttcaaattatgtagtaaactaaaaatcgacaaaaatggaaatacttgtttttcattgaacagcgaCGATTTACTCTGAAATAGAGTTCAGTAGAATTTAGTAGAGTTAGCTACTAGTATTCACCCAATCCAATCCTGCCAAATACAGCCTCCAACAGTGGTCTATACAGTAAGTTCCATTTATCACTGATCTAGCcatgatatatttaataaagtacTACTTTTGCTGTCTTGTCTGTCacaaaaatatcagaaatgaaaaatattgtTCTTACTCTGGGCTTATCATCGCAATTCATAATGCAACTGAACCATTTTAAAGGGAAATATTCAGAAGatagaaaaatattaaattaaaacatttcaaatgATCAATGTGAA

Function

symbol description
farsa Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be part of phenylalanine-tRNA ligase complex. Predicted to be active in cytosol. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha).

NR:

description
PREDICTED: phenylalanine--tRNA ligase alpha subunit

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664990.1 True 4250 mRNA 0.44 13 3596527 3620827

Neighbor

gene id symbol gene type direction distance location
ilf3 ilf3,LOC107659573 coding upstream 1156 3574633 ~ 3595371 (+)
LOC103038127 LOC103358682 coding upstream 192964 3362434 ~ 3403563 (+)
LOC111191052 NA coding upstream 239287 3346445 ~ 3357240 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding upstream 254293 3332879 ~ 3342234 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding upstream 269531 3228458 ~ 3326996 (+)
LOC111191046 NA coding downstream 24886 3645713 ~ 3651335 (+)
LOC103025262 LOC108432064,LOC108256459 coding downstream 83977 3704804 ~ 3766487 (+)
LOC103046751 LOC108432062 coding downstream 155696 3776523 ~ 3825640 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 459322 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 702284 4323111 ~ 4346597 (+)
G297218 NA non-coding upstream 184442 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 185715 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 220793 3346094 ~ 3375734 (+)
G297203 NA non-coding upstream 284009 3306169 ~ 3312518 (+)
G297190 NA non-coding upstream 377918 3217671 ~ 3218609 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 40416 3661243 ~ 3664579 (+)
G297318 NA non-coding downstream 72871 3693698 ~ 3697530 (+)
G297369 NA non-coding downstream 157079 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 205941 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 245113 3865940 ~ 3886107 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 447924 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2234592 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2306107 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2395739 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2762469 826378 ~ 834058 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 632189 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 799170 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1029816 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2081685 5702512 ~ 5711874 (+)

Expression


Co-expression Network