znf653 (znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609)


Basic Information

Item Value
gene id znf653
gene name znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4419997 ~ 4434071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022664995.1
AAGAAACACAACAGCTGCAGCTGGGTAAAGATGGCGACTCAGTGTGGGGGTAAGGCGGACAGCCTGGGCTCCGGGAGCTCCAGCGGCTCCGGGGAGCAGATTAAAGCTATGCTGCGGCGCTGCAGGGGTCGGCCCCGGCTGTCGGACTCGGACCGAGCCCAGAGGCGCCTCGAGTCGCGGAAGAAGTACGACGTTCGGCGGGTTTACCTCGGAGAGTCGCACCGGATCTGGAGCGACCTGCGGCGGCGGAGCAGCCTGAGCGACGCCGGACTCGCCGAGTACCTGATCCTGCTGAACTCCGCCTACGGAGAGCGGTACCAGCGGAGACACGCAGCGCACGGCCACCAGAAGAACAACATTCCAGAGCTGTGCAAAAATCAGAAGAAAGGAAAGAAGGTGGCCGTCACCAGCCTGCACAGTTTAGTGAGCTGGTACCAGGAGCACTGCCAGACCTGTCCTCATGAGCCTGAACTGCGAGCTGTGGAGCCGACGCTGGGTCTGTCCACCTCTGTTCTCTGGCAGTGTGAAGCTGAGCATTCCTTCATACAGCACATATCGTGGCCTGCGGGAGGTGCTAGTGaatcagaggaggaggaggaggaggaagaggaggatgaagctACAGAGGAGCCGGAGAAAAACAGAGCTGCTGAGACACCCACAACAGGTGTGCGCATCAACACAAGGGCTAGCCGAAGAGCTGTGAACCAAACTCAGCTGACAGATGCAGCAGAAGAGTTGGAGAGCGCCACGACGCAAGTATCAGAAGTGTCCCATCAGATGTCCTCCACAGCTCTCGCTCAGCTCCCAGGAGCTCCCTCCTCGCTGGGGAACCAGGCCTCGTGGGAAGTAGGGGTGGGACCAGAGGGGGAGCCGATCATGTCCGAGTCGGGAAACGAAGCCTCAGCTCAGGACTTGACAATAGAGAGCTTTCCTACAGAAGAGGCAATCGACCTGAAGACTGAAGGTAGAGGGAGGGGCGGAGTCAAGACTGAGAATTACGAGTGTGTGGTGGTCTCTGCGTCTTTGATGGAAAACGTAGAGGAGGGTTCAGACCATGAAAGAAGGTGTGTGGAGGTGGGCGGAGCTCACACTCTCTCGGAAGGTGTCGTTCGTGCACCGATGGCAGTAGCCCCGGTGCAGGGAGAGCTGTACGAGACCCAGACACTACAGAACATGGTGGGCACCTGTGACCTGCCGGGCCAGCGGGCCACACTGGAGGCATCTCAGGTTGGTGACTTAAAGCTGATCATCATCACAGGACCCAGTTATGAAGCTCTGACCTCTGAAGGCATCCAGCTCAACGTGGGAGGTGGAGGTGTGGAGGAGGTCACCTGCACAGTTATTGATGGAGTGGCTTACAACCAATTGTGCCAATCAGGAGCCGTTCTCCAGAGCAGCGTCCCAGAGACTGATAACATCATAGACCtgagtgagaagcagcagctgtTGGAGCCGAATGACGAATCGCACAATCAGAAAGATCTGCAGCGTTCTCCCAACAGATCTTCTAAGAGAAGTCGACGGGGGCCAGTGATCGAGGCAGACGGCATGCTGAAGATGTTTCACTGTCCGTATGAAGGCTGCAGTCAGGTGTATGTAGCAATCAGCAGCTTCCAGAACCATGTAAATCTGGTGCACAGGAAAGGCAGGACGAAGGTGTGTCCGCATCCCGGCTGCGGGAAGAAGTTCTACCTTTCTAACCACCTACATCGTCACATGATCATCCACTCAGGAGTGCGAGACTTTATATGTGAGACCTGTGGCAAGTCCTTCAAACGTAAGAATCATTTAGAGGTGCACAGACGCACTCACACAGGAGAGACGCCGTTACAGTGTGAAATCTGTGGTTATCAGTGTCGGAAGCGCGCCTCCCTCAACTGGCACATGAAGAAGCACACCCCCGAGGCGCACTACAACTACACCTGCGAACACTGCGGCAAGCGCTTCGAGAAGCTCGACAGCGTCAAATTCCACAAACTCAAGAGCCACCCGGACAAACAGACTACCTGAGAGCGAGGTTTATCTGGAAGACAGATATCTATATAGAAACGGCTTTGCTGCACATGGCGGGCGACGGGAATGGGGAATGGCTTCTGCTGGCCAGCACTGGTTTAAACTAGTGGACTAGTCGTGGTGTTGGTGGTCAGAGTTTCCTGTTTGTGCTCttagttttgtgtgtgttaacagtttaaacatgctaattggctgtttctccagcCTGAGTGTTGGCTTAAACAGGAGGTGGTGCCAGAGGAGATGTGCAAGAGGAAAATGAGCTGGACCAGAACCAGGAAAACGTGAAGGTAGAGTG
>XM_022664996.1
AAGAAACACAACAGCTGCAGCTGGGTAAAGATGGCGACTCAGTGTGGGGGTAAGGCGGACAGCCTGGGCTCCGGGAGCTCCAGCGGCTCCGGGGAGCAGATTAAAGCTATGCTGCGGCGCTGCAGGGGTCGGCCCCGGCTGTCGGACTCGGACCGAGCCCAGAGGCGCCTCGAGTCGCGGAAGAAGTACGACGTTCGGCGGGTTTACCTCGGAGAGTCGCACCGGATCTGGAGCGACCTGCGGCGGCGGAGCAGCCTGAGCGACGCCGGACTCGCCGAGTACCTGATCCTGCTGAACTCCGCCTACGGAGAGCGGTACCAGCGGAGACACGCAGCGCACGGCCACCAGAAGAACAACATTCCAGAGCTGTGCAAAAATCAGAAGAAAGGAAAGAAGGTGGCCGTCACCAGCCTGCACAGTTTAGTGAGCTGGTACCAGGAGCACTGCCAGACCTGTCCTCATGAGCCTGAACTGCGAGCTGTGGAGCCGACGCTGGGTCTGTCCACCTCTGTTCTCTGGCAGTGTGAAGCTGAGCATTCCTTCATACAGCACATATCGTGGCCTGCGGGAGGTGCTAGTGaatcagaggaggaggaggaggaggaagaggaggatgaagctACAGAGGAGCCGGAGAAAAACAGAGCTGCTGAGACACCCACAACAGGTGTGCGCATCAACACAAGGGCTAGCCGAAGAGCTGTGAACCAAACTCAGCTGACAGATGCAGCAGAAGAGTTGGAGAGCGCCACGACGCAAGTATCAGAAGTGTCCCATCAGATGTCCTCCACAGCTCTCGCTCAGCTCCCAGGAGCTCCCTCCTCGCTGGGGAACCAGGCCTCGTGGGAAGTAGGGGTGGGACCAGAGGGGGAGCCGATCATGTCCGAGTCGGGAAACGAAGCCTCAGCTCAGGACTTGACAATAGAGAGCTTTCCTACAGAAGAGGCAATCGACCTGAAGACTGAAGGTAGAGGGAGGGGCGGAGTCAAGACTGAGAATTACGAGTGTGTGGTGGTCTCTGCGTCTTTGATGGAAAACGTAGAGGAGGGTTCAGACCATGAAAGAAGGTGTGTGGAGGTGGGCGGAGCTCACACTCTCTCGGAAGGTGTCGTTCGTGCACCGATGGCAGTAGCCCCGGTGCAGGGAGAGCTGTACGAGACCCAGACACTACAGAACATGGTGGGCACCTGTGACCTGCCGGGCCAGCGGGCCACACTGGAGGCATCTCAGCTGATCATCATCACAGGACCCAGTTATGAAGCTCTGACCTCTGAAGGCATCCAGCTCAACGTGGGAGGTGGAGGTGTGGAGGAGGTCACCTGCACAGTTATTGATGGAGTGGCTTACAACCAATTGTGCCAATCAGGAGCCGTTCTCCAGAGCAGCGTCCCAGAGACTGATAACATCATAGACCtgagtgagaagcagcagctgtTGGAGCCGAATGACGAATCGCACAATCAGAAAGATCTGCAGCGTTCTCCCAACAGATCTTCTAAGAGAAGTCGACGGGGGCCAGTGATCGAGGCAGACGGCATGCTGAAGATGTTTCACTGTCCGTATGAAGGCTGCAGTCAGGTGTATGTAGCAATCAGCAGCTTCCAGAACCATGTAAATCTGGTGCACAGGAAAGGCAGGACGAAGGTGTGTCCGCATCCCGGCTGCGGGAAGAAGTTCTACCTTTCTAACCACCTACATCGTCACATGATCATCCACTCAGGAGTGCGAGACTTTATATGTGAGACCTGTGGCAAGTCCTTCAAACGTAAGAATCATTTAGAGGTGCACAGACGCACTCACACAGGAGAGACGCCGTTACAGTGTGAAATCTGTGGTTATCAGTGTCGGAAGCGCGCCTCCCTCAACTGGCACATGAAGAAGCACACCCCCGAGGCGCACTACAACTACACCTGCGAACACTGCGGCAAGCGCTTCGAGAAGCTCGACAGCGTCAAATTCCACAAACTCAAGAGCCACCCGGACAAACAGACTACCTGAGAGCGAGGTTTATCTGGAAGACAGATATCTATATAGAAACGGCTTTGCTGCACATGGCGGGCGACGGGAATGGGGAATGGCTTCTGCTGGCCAGCACTGGTTTAAACTAGTGGACTAGTCGTGGTGTTGGTGGTCAGAGTTTCCTGTTTGTGCTCttagttttgtgtgtgttaacagtttaaacatgctaattggctgtttctccagcCTGAGTGTTGGCTTAAACAGGAGGTGGTGCCAGAGGAGATGTGCAAGAGGAAAATGAGCTGGACCAGAACCAGGAAAACGTGAAGGTAGAGTG
>XM_022664997.1
AAGAAACACAACAGCTGCAGCTGGGTAAAGATGGCGACTCAGTGTGGGGGTAAGGCGGACAGCCTGGGCTCCGGGAGCTCCAGCGGCTCCGGGGAGCAGATTAAAGCTATGCTGCGGCGCTGCAGGGGTCGGCCCCGGCTGTCGGACTCGGACCGAGCCCAGAGGCGCCTCGAGTCGCGGAAGAAGTACGACGTTCGGCGGGTTTACCTCGGAGAGTCGCACCGGATCTGGAGCGACCTGCGGCGGCGGAGCAGCCTGAGCGACGCCGGACTCGCCGAGTACCTGATCCTGCTGAACTCCGCCTACGGAGAGCGGTACCAGCGGAGACACGCAGCGCACGGCCACCAGAAGAACAACATTCCAGAGCTGTGCAAAAATCAGAAGAAAGGAAAGAAGGTGGCCGTCACCAGCCTGCACAGTTTAGTGAGCTGGTACCAGGAGCACTGCCAGACCTGTCCTCATGAGCCTGAACTGCGAGCTGTGGAGCCGACGCTGGGTCTGTCCACCTCTGTTCTCTGGCAGTGTGAAGCTGAGCATTCCTTCATACAGCACATATCGTGGCCTGCGGGAGGTGCTAGTGaatcagaggaggaggaggaggaggaagaggaggatgaagctACAGAGGAGCCGGAGAAAAACAGAGCTGCTGAGACACCCACAACAGATGCAGCAGAAGAGTTGGAGAGCGCCACGACGCAAGTATCAGAAGTGTCCCATCAGATGTCCTCCACAGCTCTCGCTCAGCTCCCAGGAGCTCCCTCCTCGCTGGGGAACCAGGCCTCGTGGGAAGTAGGGGTGGGACCAGAGGGGGAGCCGATCATGTCCGAGTCGGGAAACGAAGCCTCAGCTCAGGACTTGACAATAGAGAGCTTTCCTACAGAAGAGGCAATCGACCTGAAGACTGAAGGTAGAGGGAGGGGCGGAGTCAAGACTGAGAATTACGAGTGTGTGGTGGTCTCTGCGTCTTTGATGGAAAACGTAGAGGAGGGTTCAGACCATGAAAGAAGGTGTGTGGAGGTGGGCGGAGCTCACACTCTCTCGGAAGGTGTCGTTCGTGCACCGATGGCAGTAGCCCCGGTGCAGGGAGAGCTGTACGAGACCCAGACACTACAGAACATGGTGGGCACCTGTGACCTGCCGGGCCAGCGGGCCACACTGGAGGCATCTCAGGTTGGTGACTTAAAGCTGATCATCATCACAGGACCCAGTTATGAAGCTCTGACCTCTGAAGGCATCCAGCTCAACGTGGGAGGTGGAGGTGTGGAGGAGGTCACCTGCACAGTTATTGATGGAGTGGCTTACAACCAATTGTGCCAATCAGGAGCCGTTCTCCAGAGCAGCGTCCCAGAGACTGATAACATCATAGACCtgagtgagaagcagcagctgtTGGAGCCGAATGACGAATCGCACAATCAGAAAGATCTGCAGCGTTCTCCCAACAGATCTTCTAAGAGAAGTCGACGGGGGCCAGTGATCGAGGCAGACGGCATGCTGAAGATGTTTCACTGTCCGTATGAAGGCTGCAGTCAGGTGTATGTAGCAATCAGCAGCTTCCAGAACCATGTAAATCTGGTGCACAGGAAAGGCAGGACGAAGGTGTGTCCGCATCCCGGCTGCGGGAAGAAGTTCTACCTTTCTAACCACCTACATCGTCACATGATCATCCACTCAGGAGTGCGAGACTTTATATGTGAGACCTGTGGCAAGTCCTTCAAACGTAAGAATCATTTAGAGGTGCACAGACGCACTCACACAGGAGAGACGCCGTTACAGTGTGAAATCTGTGGTTATCAGTGTCGGAAGCGCGCCTCCCTCAACTGGCACATGAAGAAGCACACCCCCGAGGCGCACTACAACTACACCTGCGAACACTGCGGCAAGCGCTTCGAGAAGCTCGACAGCGTCAAATTCCACAAACTCAAGAGCCACCCGGACAAACAGACTACCTGAGAGCGAGGTTTATCTGGAAGACAGATATCTATATAGAAACGGCTTTGCTGCACATGGCGGGCGACGGGAATGGGGAATGGCTTCTGCTGGCCAGCACTGGTTTAAACTAGTGGACTAGTCGTGGTGTTGGTGGTCAGAGTTTCCTGTTTGTGCTCttagttttgtgtgtgttaacagtttaaacatgctaattggctgtttctccagcCTGAGTGTTGGCTTAAACAGGAGGTGGTGCCAGAGGAGATGTGCAAGAGGAAAATGAGCTGGACCAGAACCAGGAAAACGTGAAGGTAGAGTG
>XR_002649326.1
AAGAAACACAACAGCTGCAGCTGGGTAAAGATGGCGACTCAGTGTGGGGGTAAGGCGGACAGCCTGGGCTCCGGGAGCTCCAGCGGCTCCGGGGAGCAGATTAAAGCTATGCTGCGGCGCTGCAGGGGTCGGCCCCGGCTGTCGGACTCGGACCGAGCCCAGAGGCGCCTCGAGTCGCGGAAGAAGTACGACGTTCGGCGGGTTTACCTCGGAGAGTCGCACCGGATCTGGAGCGACCTGCGGCGGCGGAGCAGCCTGAGCGACGCCGGACTCGCCGAGTACCTGATCCTGCTGAACTCCGCCTACGGAGAGCGGTACCAGCGGAGACACGCAGCGCACGGCCACCAGAAGAACAACATTCCAGAGCTGTGCAAAAATCAGAAGAAAGGAAAGAAGGTGGCCGTCACCAGCCTGCACAGTTTAGTGAGCTGGTACCAGGAGCACTGCCAGACCTGTCCTCATGAGCCTGAACTGCGAGCTGTGGAGCCGACGCTGGGTCTGTCCACCTCTGTTCTCTGGCAGTGTGAAGCTGAGCATTCCTTCATACAGCACATATCGTGGCCTGCGGGAGGTGCTAGTGaatcagaggaggaggaggaggaggaagaggaggatgaagctACAGAGGAGCCGGAGAAAAACAGAGCTGCTGAGACACCCACAACAGGTGTGCGCATCAACACAAGGGCTAGCCGAAGAGCTGTGAACCAAACTCAGCTGACAGATGCAGCAGAAGAGTTGGAGAGCGCCACGACGCAAGTATCAGAAGTGTCCCATCAGATGTCCTCCACAGCTCTCGCTCAGCTCCCAGGAGCTCCCTCCTCGCTGGGGAACCAGGCCTCGTGGGAAGTAGGGGTGGGACCAGAGGGGGAGCCGATCATGTCCGAGTCGGGAAACGAAGCCTCAGCTCAGGACTTGACAATAGAGAGCTTTCCTACAGAAGAGGCAATCGACCTGAAGACTGAAGGTAGAGGGAGGGGCGGAGTCAAGACTGAGAATTACGAGTGTGTGGTGGTCTCTGCGTCTTTGATGGAAAACGTAGAGGAGGGTTCAGACCATGAAAGAAGGTGTGTGGAGGTGGGCGGAGCTCACACTCTCTCGGAAGGTGTCGTTCGTGCACCGATGGCAGTAGCCCCGGTGCAGGGAGAGCTGTACGAGACCCAGACACTACAGAACATGGTGGGCACCTGTGACCTGCCGGGCCAGCGGGCCACACTGGAGGCATCTCAGGTTGGTGACTTAAAGCTGATCATCATCACAGGACCCAGTTATGAAGCTCTGACCTCTGAAGGCATCCAGCTCAACGTGGGAGGTGGAGGTGTGGAGGAGGTCACCTGCACAGTTATTGATGGAGTGGCTTACAACCAATTGTGCCAATCAGGAGCCGTTCTCCAGAGCAGCGTCCCAGAGACTGATAACATCATAGACCtgagtgagaagcagcagctgtTGGAGCCGAATGACGAATCGCACAATCAGAAAGATCTGCAGCGTTCTCCCAACAGATCTTCTAAGAGAAGTCGACGGGGGCCAGTGATCGAGGCAGACGGCATGCTGAAGATGTTTCACTGTCCGTATGAAGGCTGCAGTCAGGTGTATGTAGCAATCAGCAGCTTCCAGAACCATGTAAATCTGGTGCACAGGAAAGGCAGGACGAAGGTGTGTCCGCATCCCGGCTGCGGGAAGAAGTTCTACCTTTCTAACCACCTACATCGTCACATGATCATCCACTCAGGAGTGCGAGACTTTATATGTGAGACCTGTGGCAAGTCCTTCAAACGTAAGAATCATTTAGAGGTGCACAGACGCACTCACACAGGAGAGACGCCGTTACAGTGTGAAATCTGTGGTTATCAGTGTCGGAAGCGCGCCTCCCTCAACTGGCACATGAAGAAGCACACCCCCGAGGCGCACTACAACTACACCTGCGAACACTGCGGCAAGCGCTTCGAGAAGCTCGACAGCGTCAAATTCCACAAACTCAAGAGCCACCCGGACAAACAGACTACCTGAGAGCGAGGTTTATCTGGAAGACAGATATCTATATAGAAACGGCTTTGCTGCACATGGCGGGCGACGGGAATGGGGAATGGCTTCTGCTGGCCAGCACTGGTTGTCAGAGTTTCCTGTTTGTGCTCttagttttgtgtgtgttaacagtttaaacatgctaattggctgtttctccagcCTGAGTGTTGGCTTAAACAGGAGGTGGTGCCAGAGGAGATGTGCAAGAGGAAAATGAGCTGGACCAGAACCAGGAAAACGTGAAGGTAGAGTG

Function

symbol description
znf653 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF653 (zinc finger protein 653).

NR:

description
PREDICTED: zinc finger protein 653-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022664995.1 True 2314 mRNA 0.55 10 4419997 4434071
XM_022664996.1 False 2299 mRNA 0.56 10 4419997 4434071
XM_022664997.1 False 2257 mRNA 0.55 10 4419997 4434071
XR_002649326.1 False 2284 misc_RNA 0.56 11 4419997 4434071

Neighbor

gene id symbol gene type direction distance location
epor NA coding upstream 5306 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 27131 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 56393 4356987 ~ 4363604 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding upstream 73400 4323111 ~ 4346597 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding upstream 260535 4080149 ~ 4159462 (+)
LOC103021497 NA coding downstream 52833 4486904 ~ 4508485 (+)
LOC111191035 LOC108412261,LOC108278278 coding downstream 77338 4511409 ~ 4598805 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 275393 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 292616 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 300597 4734668 ~ 4770755 (+)
G297529 NA non-coding upstream 1228 4417976 ~ 4418769 (+)
G297516 NA non-coding upstream 64033 4352653 ~ 4355964 (+)
G297497 NA non-coding upstream 144174 4215295 ~ 4275823 (+)
G297405 NA non-coding upstream 253435 4127521 ~ 4166562 (+)
G297394 NA non-coding upstream 286133 4011777 ~ 4133864 (+)
G297531 NA non-coding downstream 1995 4436066 ~ 4436423 (+)
LOC111191027 NA non-coding downstream 6273 4440344 ~ 4443094 (+)
LOC111191048 NA non-coding downstream 24384 4458455 ~ 4477769 (+)
G297544 NA non-coding downstream 46814 4480885 ~ 4481291 (+)
G297549 NA non-coding downstream 80195 4514266 ~ 4514806 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 120550 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 779383 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1271394 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3058062 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 3129577 1287516 ~ 1290420 (+)
LOC111191039 NA other downstream 216572 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1268441 5702512 ~ 5711874 (+)

Expression


Co-expression Network