LOC103026631


Basic Information

Item Value
gene id LOC103026631
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5348375 ~ 5356879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665001.1
TAGGACACCGGCGGCCATATTTTCAAAAGAAAAGTCCCGATATCGTTTCTACGCTGTTGTTTTTGCGGcttctttaatttaatgttgtgTTTGGGAGAATTTGGAGTGACCCGCTGCCCGGTTCTCCCATTCCCGTCGTTTCTACTCGGATATGGACTCCGTCCAGAACCGGGTACCGGAGGAGGAGCGCGGGTCGGGGGCTGAGGAGATCAGCGCGGTGAAGGAGGAGGCAGCGGACCGggggagcagcagcagcgggcAGGCGGACGCGTTCAGCGGGAAGACGAGCACTTTCAGCGGGCAGACGAGCACTTTCAGCGGGCAGACGGAGGCAGAACCGCCGGGTGTTAAAcaggagggagaggaggagtggACCGTGGGGGTGAAGGAGGAACCGAGCCCGGTTCGGATCGGGTCGGAAGCGGAGAGTCCGGCGGAGATAGAGGTGAATTTGGAGCTGGGAAGCGAGTCGGAGGAGAGCTCGGAGAACCGGTCCGGTTCCCACAGCAGAGGCCGGAAAAGAGCTCACCCGTTCCCGCAGGAGCAGCTCAGAGAGATGGAGGAGCCGTCAGCACTCGTCGACTTCCTTCGGGAGAGAGGGATTTCAGAGGACCTGATCCAGCGAATGGAAACGGATAAGATTGATGTCTCTGTGATTCCACTGATGGCTGAAACCGAACTTCAGCAGTACATCCCTCATTACGGAGATCGACTAGCAGTCATAGACTATTGCCTTAATAACCAGCCTCCTGAACGGAGAACCCAAATGATGGACCGACTGCAGACCACGCTGTTCGGCCCGAGAGAGGAGGTCTCCAGAAAGCACATGGGCAACACTTACGCCAAAAAGAAAGCTAGGAGAGTGGAGCTCGGGTGGATGAACTATAATGAGAAAAGCTGCAACTTCAAGCAGGTTCGCACTGCCAACGGTGGAGGAACCAAACACATCAGCATCAACAAGCAGGCGAAACTGTGTGACGTTCAGAAAATGGCTGAGAGGATCTTCTTTCCTACTGGAGCTTCCAGGTTCTTCTATCTTAAGGATGTTGACTGCGACATCCGGGACTTCTCTCACAGGCGTCTGGATCAGAGCCTAACTGTGGAAGATCTTTATAAAGCAAATAAAGCGAAAATTGTGagactctacctctttacaaaaAAGCGCAACGTGAACAATGGTGTGAACAATGGCACGAACAACGACGTGAACAGTGTGCCCAGTTCCCTAGAATTTTCTCAGGGGGGTAGCAGCAGTTACTCGCAGCTGGAGAACGGTGACTTCGGATTTCGTGCGGCACAGAGCCAAACTTTTGAAAATCACCAGACTTCTCGAGAAGGTAGTAATAACACACATGGTACAGTGAGATTCGACCAAGGATACGATGAAACCTATTGGGAGGAACTGAATCCGGAGAACAGTTACGTCGCAAATACCGAATGGATGGTGGAACATAACAACGAAGATTCTCTGAATAATTCAGACGTCAGCAGAATCGTTCCACACGTCGGTGAGGTTCCAACAAGCTCTGGGAACGCCTTCACGATAAAAGTTGGCAAGGAGGAGGAGCTCGGAACACAAGCTGAGATTATTGATTGCGACAGTTTCGACGACACTGTTTCTTTCGAAGACGATACTAGGAAGCTTGCTGTTGTGGTACGGCGAGGAAGCTGTCTCAAAGATATGATGGCTGCTTTCAATGACCCAACAATAATGGACAAGGACCTGATAATCCATATGAAGCTTCCTAACGGAGCATTGGAAACACAAACTGGACCGGGAGTTTTCAGGGATTGCCTTTCTGAATTTTGGAGCGAATTTTACCACAGATGTACTCTAGGGGCGGATGTTAAGGCACCGTTACTAAGACATGAATTTCAAGCCCCTGAGTGGCAGGCCATTGCGAGGGTTCTTGTAAAAGGTTGGCTTTCCGAAAAATACTTCCCCGTTCATCTCCCGCTTCCGTTCTTGGAACAGGCGTTCTACGGAACGATCTACAGCAGCGTGACGGACGCTTTTATGCTCTACGTCTCAAAGAATGACCGAGAGGTTCTTCGACAAGCATCAAACGACTTTTTGTCCGTAGACGAAGAGTCACTGCTGGACGTTCTCGGTTCGTACGAATGCCATCGGAGACCAACTGCAGAAAACCTCGTCCTACTCCTGTCTCAGCTAGGCCACAAAGCTCTCATCCAAGCGCCAACGTATGTGATCCAGTGTTGGAAGCCTGTTCTTGCGGATCTTGCCAGAACTCTCTCCCCAAAGAAATTGGTGGAGATCATCGAGGAACGAGTTCCATCGCCCAAGAAGGTGAACGCTGTTCTGAAATTCCCAGAAGACATGAACGCCCAACAGACTACAGTATCACGAAACCTGAAACGGTACATCAGGGAAATAGATGAAGGTACCCTAGAGCGCTTCCTTCGCTTCTGTACGGGGGCGGACGTTCTCTTCGGAAAGGACATCGCAGTGCAGTTCTCTGAAAAGAAAGACTTGGAATGTCGCCCACAAGCACATATGTGTTCATGCCTTCTCGTACTGCCTGTAAAATACCAGAATTACCCAGATCTGCGGAGTGGCTTCAGTGCTGTTCTTAATAACTCAGTTTCGGTAATGAATAtcatataatattgtataatatcaTATATACGGAAAGCACTGTTAAGTTAACCGGTTGTATACATACTTAGGGATGTCTCAATCTAATCCAGGGGATCAGGTATcgagtattattttattatatttatctcAATATAGGTTATTTAGGGTTATTTGGGTTATTTAGTTATTCTTTTGACACTGGTGTCCATCCTCAAGATATTAAATGTGGACATTACTGTGTAGCCAACAGTACTGAGGAGAGTTTTCAGAAGAGTTTGCATTGTGAAACTGTATTATTTTACAgtggggcaaaaaaaaaaacactccataatatttaaactaaactatacattttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665001.1 True 2963 mRNA 0.48 3 5348375 5356879

Neighbor

gene id symbol gene type direction distance location
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding upstream 3857 5278162 ~ 5344518 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding upstream 78273 5229044 ~ 5270102 (+)
recql5 recql5 coding upstream 179860 5117580 ~ 5168515 (+)
gadd45gip1 NA coding upstream 275192 5071404 ~ 5073183 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding upstream 558692 4773643 ~ 4789683 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding downstream 58318 5415197 ~ 5451392 (+)
dnaja3 LOC108431932 coding downstream 299887 5656766 ~ 5666429 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding downstream 362190 5719069 ~ 5719464 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 386909 5743788 ~ 5761476 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding downstream 408120 5764999 ~ 5828725 (+)
G297634 NA non-coding upstream 145713 5169353 ~ 5202662 (+)
G297638 NA non-coding upstream 169637 5178355 ~ 5178738 (+)
LOC111191036 NA non-coding upstream 231565 5112380 ~ 5116810 (+)
G297614 NA non-coding upstream 285713 5062316 ~ 5062662 (+)
G297604 NA non-coding upstream 309328 5038775 ~ 5039047 (+)
G297656 NA non-coding downstream 4527 5361406 ~ 5403107 (+)
G297658 NA non-coding downstream 34441 5391320 ~ 5458441 (+)
G297660 NA non-coding downstream 38845 5395724 ~ 5398831 (+)
G297657 NA non-coding downstream 101670 5458549 ~ 5461512 (+)
G297679 pam16,LOC107695711,LOC106601835 non-coding downstream 105826 5462705 ~ 5466991 (+)
LOC111191039 NA other upstream 672754 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 914304 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1048928 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1707761 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2199772 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 345633 5702512 ~ 5711874 (+)

Expression


Co-expression Network