LOC111191037 (LOC108441001,LOC108276218,LOC106606473)


Basic Information

Item Value
gene id LOC111191037
gene name LOC108441001,LOC108276218,LOC106606473
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4709464 ~ 4711739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665002.1
GTTCCATATCTCCATATCACACTCCATATCTGAGCAGGACTTGGATGACCTGATGAGGAGCTGAAGGATGGAGGCTGGGAAGGTGTACAGCAGCAACACCGTCCTCCAGGCCAGGAAAGCGGTGGAACAGCTGAGACTGGAGGCCGGCCTGGAGAGGATCAAGATTTCGGCTGCAGCTGCTCAGCTGGTTCAGTACTGTCAGGAGAACCGGCGTGGAGATCCACTGCTGACCGGCATCTCTGCCTCATCAAACCCTTTCAAAGACAAGAAAACCTGTGTGCTGCTATAGGAGAACCAACAACCATGAAGCCACACATGCATCACTAATAAAGACAATGAAAATTCTGGTAATCTGTAAGaaataatatagcatatttatatatagcatATGTAATATAACAAGAACACCAAGCAAAACctacataatattttaaagatgttCTGACTCAATGTATCTATCCATCAGTATAGCTTTTGCCCAACTTCCATGCATCCCACACATCAACTTCCAGAaatgactgttcacttgctgcctaatatgtaGATAAGATATATAAAAGTGCCAATATAATGTGATAATCAATGTTATTTACTTGAATATTCAGGCTGATTATTgtagactgtatatatatttatattatgaaaGGTAATACCCAGTAGTGGTATCTAAAGCTCTCTTTTAGCATCACTTGTGTTGTAAATGTTCTGTATTATGGATTAATTTCACAGCTTTAACTCTGTATAATGTACTGTATGCGTCCACTGacaaacaagtatctccatttttgttgatattTAGTTCATTAcgtaatttaaacagacaaactgtcctttacactgtgccaaaatgtcttgataaaAAGACCagtagaaatacttcaaaatgacttgaaattaaccctttttatatctttttataaggtttttttttctctttcctgtaaagttgctgttttggagatacttgtttttcgtTGGACAGcgactatatacactattactatTTAAAGGCAATGATACATcttgtttaaactttttttgtctttctctgacAATTCAAATAAGTGAAACATTgatgtttttgcctttttactgttttttaatgcactgCAATTTAGTTTTCAACTCAAAACACaactcagtttaaaaaaaaaaaaacacacattatatgatcaaataacaaataaaaaaggttcACAAA

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665002.1 True 1201 mRNA 0.35 2 4709464 4711739

Neighbor

gene id symbol gene type direction distance location
LOC111191035 LOC108412261,LOC108278278 coding upstream 110659 4511409 ~ 4598805 (+)
LOC103021497 NA coding upstream 200979 4486904 ~ 4508485 (+)
epor NA coding upstream 294773 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 316598 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 345860 4356987 ~ 4363604 (+)
LOC103025123 fam173a coding downstream 14948 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 22929 4734668 ~ 4770755 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding downstream 61904 4773643 ~ 4789683 (+)
gadd45gip1 NA coding downstream 359665 5071404 ~ 5073183 (+)
recql5 recql5 coding downstream 405841 5117580 ~ 5168515 (+)
G297493 NA non-coding upstream 43850 4583856 ~ 4665614 (+)
G297561 NA non-coding upstream 50815 4654334 ~ 4658649 (+)
G297490 NA non-coding upstream 103595 4601349 ~ 4605869 (+)
G297492 NA non-coding upstream 108849 4599689 ~ 4600615 (+)
G297551 NA non-coding upstream 179398 4529089 ~ 4530066 (+)
G297571 NA non-coding downstream 6040 4717779 ~ 4788076 (+)
G297580 NA non-coding downstream 84255 4795994 ~ 4802293 (+)
LOC111191040 NA non-coding downstream 90563 4802302 ~ 4806391 (+)
G297604 NA non-coding downstream 327036 5038775 ~ 5039047 (+)
G297614 NA non-coding downstream 350577 5062316 ~ 5062662 (+)
LOC111191039 NA other upstream 33843 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 275393 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 410017 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1068850 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1560861 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 990773 5702512 ~ 5711874 (+)

Expression


Co-expression Network