slc35b1 (slc35b1,LOC107590797,LOC107582861,LOC107678880)


Basic Information

Item Value
gene id slc35b1
gene name slc35b1,LOC107590797,LOC107582861,LOC107678880
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 283 ~ 11763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665005.1
TTGGGGAAGTCATGTAAACCTATCCCAGTGATGATCTTAGGAGTGACCATTCTGCGGAAGAAGTACCCCATGGCCAAGTATCTGTGTGTGCTCCTGATTGTTACTGGTGTGGCACTTTTCCTCTACAAACCCAATAAGGGCTCCACCACCTCAGATGAACATATTTTCGGTTTTGGAGAGATGCTGCTGCTTTTGTCTCTTACCTTGGATGGTCTGACGGGCGTGGCTCAGGATCATATGAGAGCACGTTTCCAGACAGGAGCCAATCACATGATGCTGAACGTGAACCTGTGGTCCACGCTGTTTTTGGGCTCGGCTGTGCTGTGGACAGGTGAGGTGTGGGAGTTTTTGAGTTTTGCTGATCGCTACCCCAGCGTCATCTACAACATCATGCTCTTTGGCATCACCAGCGCTCTAGGACAGACTTTTATCTTTATGACGGTTGTGTATTTTGGACCTCTGACCTGCTCTATTGTCACGACCACGCGGAAGTTCTTCACCATCCTGGGCTCGGTGCTGCTGTTCGGAAACGTAATCAGCCCCGTGCAATGGTTCGGAACCATCCTCGTTTTCTTGGGTTTGGGGCTCGATGCCAAGTTTGGAAAGGCACCCAAGAAGACTACACACTAAAGCACAAAGAGAATGCCTGAGcatatgagtgtgtgagagtgtgtgtgtgtgttgactggGTGAGCACACACACTTGTGTGCTGAACTCATAGACAGTAAACTTAAGAAGCATCTGTTTGTCAGTGCACTATTCCCATCAGTGGCTAATCTTAAAGACATTTATATATGACTTATTTTTATGGCATTGAATATACTGGAGTTATCTGCTAGCCTTGTTGAACAGGGACACTACGGCCCGTGTGCAGATCTCCACTCATCAGCCCCTGCTTGCACAGCAGCCAGGATTTGCTTTTAGGTTCTAGAAAGTAAAGGGACAGAGTATGAATTGTGAATGAGGAATAGTCAACATATTGCACATTCTCCAGCTTAGAACTGCATTACCCAGGGATCCTAGCACCATAGGAACATGAGCATTGCAAGAGAACGCCGAGTTTTGACCAGTCATTGTAAATTAAACTCAGATAACAGTTTTAGTCTTATTTCTGCTCTGGAATTTGTATCAATACCTCATTTTTAGTTCGTATCAAGTGTCCTGAATTAATGTTTTGGAATCATATTTTGTTTTCAGAACTGTAAAACTTGTGTTGTGTTCCATTTAAGAAAGATGCGCAGATGTCGGAATTTTTcgtacacacacagtactgtccagATTCTATCTATGGAGATGTTTGAATGCTGTCtggatgcacaaaatactgtatcattttttaTCAACTGTTATCACTAGCGGTGCTAACCTgaaacaatgctaacaatgctataGCTGATATCTGATGAATGCTAAGCTGGAAGGCAGTCAGACATCCGAGGTAAATGAAACGcagcttcattcattcatttgttcattcattcatgagtgtgtgtgtaagtgtatgtgtgtgtgtttacatgtaCACGCTCCATCCAAGACCTACAACCAGTGTTCCGTTATGTCCACACAAACTAGCAAACCACACTCAGCCagattctattctattatattccTGATGAAATTCATTCCGACCTGTTCACCGCAAATCTTTCATGAAAGACAAACATGGAACGAGTTTTCATATGTTTGCATTCATGTCTGTCTCGTTTACTGTCTGTTCAAATGTCATTTTCCTCTCCGTACAttttagagaaaaataaaaaaatgttttggaacAATT

Function

symbol description
slc35b1 Predicted to enable UDP-galactose transmembrane transporter activity and UDP-glucose transmembrane transporter activity. Predicted to be involved in UDP-galactose transmembrane transport. Predicted to act upstream of or within carbohydrate transport and transmembrane transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Is expressed in hatching gland; notochord; and polster. Orthologous to human SLC35B1 (solute carrier family 35 member B1).

NR:

description
PREDICTED: solute carrier family 35 member B1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15275 SLC35B1; solute carrier family 35 (UDP-galactose transporter), member B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665005.1 True 1781 mRNA 0.43 6 283 11763

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding downstream 107005 118768 ~ 257003 (+)
LOC103033788 slc4a1 coding downstream 853086 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 880332 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 899696 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 937541 949304 ~ 958431 (+)
G296514 NA non-coding downstream 100681 112444 ~ 112700 (+)
G296536 NA non-coding downstream 245949 257712 ~ 257925 (+)
G296539 NA non-coding downstream 251724 263487 ~ 264231 (+)
G296543 NA non-coding downstream 259772 271535 ~ 271788 (+)
G296545 NA non-coding downstream 262297 274060 ~ 274379 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other downstream 25070 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 814615 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 1180000 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 1275753 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 1347349 1359112 ~ 1361935 (+)

Expression


Co-expression Network