LOC103032830


Basic Information

Item Value
gene id LOC103032830
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 949304 ~ 958431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665006.1
TCAGGAGGTGAAAGGGTGAGGTTAAATCTGAGAGATAGTGTAGATAGTGCTGCATGAACAGTGAGATACACAGATAAGGAGAACAGATCTGCCGTGTTTTATTCTTCAGTAATGAAGATGAAGCTGTGGATATTGGAGCTCAGCTTGCTGCGACTGTTTTACTGCTGATCACACAGACTTCCTGTAAGAGTCTCGGAGACTTGAGGAGGTAAACAAGCGGTTGTCCAGAAGATGGCGGCGGAGAGTCGCTCGGAGTATGAGGAGGGTCGCCCGGGGTGTGAGGAGGGTGGCTCGGTGTGTGTTGGCGGTTTGCCCGCTGATAtggagcaggagcggctggCTGATAAGCTTCTCATTCATTTTCTTCGCTCCAGAAACGGTGGAGGAGAGATCACATCAGTTAACATTAAAGAAGTTAACCGGAGTGCCGTGATCACTTTTGAAGACAGCAaagTTGCCCTCAATGTGCTCAGTCATTGCCCACACATCTTGAAGGTGGACGGCAAGGAATACAAGCTTTCTCTTAGTGTTCCAGGGCAAGAGTCATCACTTCTGAATAAGGTAATCCTTGATATGTCTGTGACCATTGACTGCAGTCAGCTTCCTCTGGGTGAAGAGACTGTCCGAAACCTCTGTAAGAAATATCCAGACCTTCGTGTCAAGTTCATCAAACCTCAGAGGCACTGCACCTTACGTGGGCTCCACTCAGAGATCCAGACTGTTTTGTCTCATCTGGTGGAGCTCCTTAGAGACATTGACCCTCAAGGGGCAGCATGTTCATCCTCAGGAAAAGACAAAAGAGTAGGTTCAGGCAGTTTAAAAGAGCAAGAAGAATCCAGACCACCAGACCCACTCCACGGACTTCAAGTTGGTGAACTGGGTTCACTGTATCATGAAGCCAAGTCTTCTGAGATTTTGCCTCAGAAACCAGGTGAAGAAGGGAACTCCATGGATCTGCCATGGGAACAGGAACACTTTCACTCTTCTGGGGACATAAAAGGCTGGATCGAAGAAGCAGATGCAGAGACTCAGTCCCTAATCATGGAGGCTGATGTGTTTGCGTACCTGAGCAGTAAGAGTGAGCGATACAAGCATATACTCCTCATTAATGGGGTGCGTGTGGTGGATGCAACATCTGATGGAGTTACCACACTGTACCTGCAGTCAGATTCATTGGCCAGGACAAGGTCAGAGGCGGCAAAACACATGAATCAAGCCAGCAAAGAACTTAGTCAACTCTACCAGCAACAGGAGGGTAATCTGAGAAGAGCCCAGGTTCTGAGGAGCATGGTTGGACTAGAAGGAGGGGACACTAATGcatttaaagaattacagtctTTACTGCCAAAGGTGTTGCTCACCTCTGATCAGACTTACCTATACATTGTAGGTGAGAGCAGTGAAGTCTCTCAGGCAAAACAGATGCTTCTTCTTGGTTCAGGGAATGGCCAAGAGTTGAGCCCTGTAGCAAAACCTTCTTGCCCAGACGCAAGACAAGGAAGCTCATTTTCATCAACCCTGTCAAACTGCTACACCTCAACATCTGATGAAGAAGCAACacaaatgtatgaaaaaaggGTAGGATCCAGAACAGCAGTCCTTAAAACAAACGTTTCAAGTACTGAACAAAAGGCGAGAGGTACTGAAGGATATAAACTGGCAGCTCGATTCAAGAACTCTGAACTGGGATTACCAGGGTTCCACCtcggagaaagagggagaagtAAAGAGCTCCGAGAGTTAACCACAGCCTCGAACAGGTTAACATTGGCATCAAACTTTGAGCCATTGCCCCCCTTAAAGTATTCCCTAGGTTCTGCAGGTGCATTAAGTGGGGACCAGGCTGGGGGTTCTCTGGTTGGTCCCCTCAGAGTGACAAGTGCACTGCACTCAGAAGATATCTTATTCAACAATGTGGAGCCCTTTGGAAGTCCGTTCAAAGCTAGTGGATCACTGTCATCCAAAGTTAGTGGAATAAATTCCACAGAGTTCACCTCCACATTTACACCTGGAGTCAAAACTACACCCAGTATCTCTCAGAATGTCCTTGCAGCACTTGACACACCTACACAATCTGCATATCCATCCACCGCCAGGACTTCCTTAAAAAGGTCAAGCAGTTTCTCTGGACGGCCTTCCCCAAAACTGGGTACACAGAAGACTGGGATCACTGAAAGATCAAGACCTGCCACTGGAAtgacagaaaaacaggcaaaatcCAGTAGTCTTACAAATTCCTACACTGTGTCAGAAGAAGTCATAGTGCCTTCTGTGATGTGGAATTACATCAAAGAGGCCTATCGCTCCCGATTGGATGCCATGATCTCTGATCTGCAAGTGACAGAGATCCTCTCAGACAAGGACAAGGTCAGGGTTATTTTGAAGGGACCAGAGTCATCCGAAGTGGAGGAATGTAGGAGTAAGCTTCAGAGGTTCATAGCTATGATAGATACAGACTTTTACATTCAAGAGCATCAACTGGCAGATCTTTGTGTGTCCGAAAGCAGTGAGGCATTCAAGACATGCTGCTCAAACATTCGCTCACGCTTCAGCAAAATCTCAGTGCAGAGCACAAAGGACACTGTCCTGCTGATCGGTCCAAAATCGCTGTGCTTGCAGGCCACTGAAATGTTAAAAGAAGTGTTTTTTCATGAAGTGCTGAGTTCTGTACCTCCAGTGAATAGCCTCACCCCTCAGGAACCTATAGCTGAAGGTGAGGTCAATGATTTGGCTGACCAGATGAGACCAAATGAGACCAAAGCTTACACGGAAGGTTTGGAAGCATCCAGACGTAAAAGTTCCCAATCTGAGGCTTGGACTGTGAGTTTTAACCAGTCACCAAAGCAGAAGAATTCTGGTAAGGAGAAAGCTAAGGAAGGTGAACCAGGATGTTTGCAAACAAACAAGACTCTTGCATCTCCAAGCCAATCGCCTGAAGTAAGCGAAGTGGAGGTGGGAACAAAGGATGACTGGACAACTCATCTGTCACTcacaacacaaagaaaacaaaaatccaCCTCCAGTACAACTGCAAAGCAGACTGGTCATCGAGTGCGTAGCAAGTCAGAACTCCCCCTGTTGGGTCAAGAGAGTGCCCTGCCACATCATGATCAGAACACATCGTGCTCTAAAGCAATGACAGCCGAAGAGCCCTCACAGAAATTGCCTGTGCATTTGCTTAAACAGGAACCGACTGCAAAAGAAGACCCTAAAGGAAAAGTTGTAAGCAAGGTTCCAAAGCATGCACAAGGCATCCAGGGTACCATGAGATATGCAGAACTTTCACAGACCTTGCAAGGCTACCTCCGATACACAACAGCCAAGATCACCTACTGCATACCTGATGGCATCCAGGGGGAAGCGGATCCTAACCCTGGGTCACCATTCAAAGGAGGTGTATTTGAGGCTTATTTGCCACTTAATCCAGTAGGACAGGCCTTACTCCCAAAACTGGAGAAAGCTTTTAAGCAAGGGCTATCCTTCAGagttttccccccaaaaaatggaGAGGACGGCCCAGCACGAATATGGTGGAATCGAATTATTCCTCATAAGACCAAGATGGAAGGAGGGAAGAGTGGAAATGGATATCCAGACTCATCCTATCTGTCCCTCTTATCTGAGGCACTGAAGATCTATGGGATAAAAGACTGAAAATGCTGACTGAAACTATGATCCAACCATATTCATCAATATACTGTCTATAGTCTTTCAAGATAGAGATTTTTTAGAATCATGTGTATATCAAGTCAAGAATGTATACATTTACAATCAATGtcaagatttttaaaattttatacatatataaattttataagtatatatacTACTAGTCAAAGTTTCTTTAGAACACCGCTGTTGTTTAGTGGTCCAGTAGCAGACAAGCTGCATGCTTCTCTCTTGTACTCACAcgtctcttggtgcagctgtgcagctatagctgtatcagttttctccagtttaaaAGAGTCTTTTAAAGGTTGTGTAAATGTTGAAGTAGAGAGTGCAGTtttaatactgctttactacagacaaaggctttgtaaattctcatttttaaataaatttccaAAGCAAAGTATATTTACATTGCTACTGACCAGCTTTAAGCTATTAACCAATGACttgtctttcatttttttacagtatacatttcatcttgttttttacaatatacagttTCCTTTCTTta
>XM_022665007.1
GCAATAGTTAGGTCAGGTAACGTTAAGCTGCGCACTCAGGAGGTGAAAGGGTGAGGTTAAATCTGAGAGATAGTGTAGATAGTGCTGCATGAACAGTGAGATACACAGATAAGGAGAACAGATCTGCCGTGTTTTATTCTTCAGTAATGAAGATGAAGCTGTGGATATTGGAGCTCAGCTTGCTGCGACTGTTTTACTGCTGATCACACAGACTTCCTGACTTGAGGAGGTAAACAAGCGGTTGTCCAGAAGATGGCGGCGGAGAGTCGCTCGGAGTATGAGGAGGGTCGCCCGGGGTGTGAGGAGGGTGGCTCGGTGTGTGTTGGCGGTTTGCCCGCTGATAtggagcaggagcggctggCTGATAAGCTTCTCATTCATTTTCTTCGCTCCAGAAACGGTGGAGGAGAGATCACATCAGTTAACATTAAAGAAGTTAACCGGAGTGCCGTGATCACTTTTGAAGACAGCAaagTTGCCCTCAATGTGCTCAGTCATTGCCCACACATCTTGAAGGTGGACGGCAAGGAATACAAGCTTTCTCTTAGTGTTCCAGGGCAAGAGTCATCACTTCTGAATAAGGTAATCCTTGATATGTCTGTGACCATTGACTGCAGTCAGCTTCCTCTGGGTGAAGAGACTGTCCGAAACCTCTGTAAGAAATATCCAGACCTTCGTGTCAAGTTCATCAAACCTCAGAGGCACTGCACCTTACGTGGGCTCCACTCAGAGATCCAGACTGTTTTGTCTCATCTGGTGGAGCTCCTTAGAGACATTGACCCTCAAGGGGCAGCATGTTCATCCTCAGGAAAAGACAAAAGAGTAGGTTCAGGCAGTTTAAAAGAGCAAGAAGAATCCAGACCACCAGACCCACTCCACGGACTTCAAGTTGGTGAACTGGGTTCACTGTATCATGAAGCCAAGTCTTCTGAGATTTTGCCTCAGAAACCAGGTGAAGAAGGGAACTCCATGGATCTGCCATGGGAACAGGAACACTTTCACTCTTCTGGGGACATAAAAGGCTGGATCGAAGAAGCAGATGCAGAGACTCAGTCCCTAATCATGGAGGCTGATGTGTTTGCGTACCTGAGCAGTAAGAGTGAGCGATACAAGCATATACTCCTCATTAATGGGGTGCGTGTGGTGGATGCAACATCTGATGGAGTTACCACACTGTACCTGCAGTCAGATTCATTGGCCAGGACAAGGTCAGAGGCGGCAAAACACATGAATCAAGCCAGCAAAGAACTTAGTCAACTCTACCAGCAACAGGAGGGTAATCTGAGAAGAGCCCAGGTTCTGAGGAGCATGGTTGGACTAGAAGGAGGGGACACTAATGcatttaaagaattacagtctTTACTGCCAAAGGTGTTGCTCACCTCTGATCAGACTTACCTATACATTGTAGGTGAGAGCAGTGAAGTCTCTCAGGCAAAACAGATGCTTCTTCTTGGTTCAGGGAATGGCCAAGAGTTGAGCCCTGTAGCAAAACCTTCTTGCCCAGACGCAAGACAAGGAAGCTCATTTTCATCAACCCTGTCAAACTGCTACACCTCAACATCTGATGAAGAAGCAACacaaatgtatgaaaaaaggGTAGGATCCAGAACAGCAGTCCTTAAAACAAACGTTTCAAGTACTGAACAAAAGGCGAGAGGTACTGAAGGATATAAACTGGCAGCTCGATTCAAGAACTCTGAACTGGGATTACCAGGGTTCCACCtcggagaaagagggagaagtAAAGAGCTCCGAGAGTTAACCACAGCCTCGAACAGGTTAACATTGGCATCAAACTTTGAGCCATTGCCCCCCTTAAAGTATTCCCTAGGTTCTGCAGGTGCATTAAGTGGGGACCAGGCTGGGGGTTCTCTGGTTGGTCCCCTCAGAGTGACAAGTGCACTGCACTCAGAAGATATCTTATTCAACAATGTGGAGCCCTTTGGAAGTCCGTTCAAAGCTAGTGGATCACTGTCATCCAAAGTTAGTGGAATAAATTCCACAGAGTTCACCTCCACATTTACACCTGGAGTCAAAACTACACCCAGTATCTCTCAGAATGTCCTTGCAGCACTTGACACACCTACACAATCTGCATATCCATCCACCGCCAGGACTTCCTTAAAAAGGTCAAGCAGTTTCTCTGGACGGCCTTCCCCAAAACTGGGTACACAGAAGACTGGGATCACTGAAAGATCAAGACCTGCCACTGGAAtgacagaaaaacaggcaaaatcCAGTAGTCTTACAAATTCCTACACTGTGTCAGAAGAAGTCATAGTGCCTTCTGTGATGTGGAATTACATCAAAGAGGCCTATCGCTCCCGATTGGATGCCATGATCTCTGATCTGCAAGTGACAGAGATCCTCTCAGACAAGGACAAGGTCAGGGTTATTTTGAAGGGACCAGAGTCATCCGAAGTGGAGGAATGTAGGAGTAAGCTTCAGAGGTTCATAGCTATGATAGATACAGACTTTTACATTCAAGAGCATCAACTGGCAGATCTTTGTGTGTCCGAAAGCAGTGAGGCATTCAAGACATGCTGCTCAAACATTCGCTCACGCTTCAGCAAAATCTCAGTGCAGAGCACAAAGGACACTGTCCTGCTGATCGGTCCAAAATCGCTGTGCTTGCAGGCCACTGAAATGTTAAAAGAAGTGTTTTTTCATGAAGTGCTGAGTTCTGTACCTCCAGTGAATAGCCTCACCCCTCAGGAACCTATAGCTGAAGGTGAGGTCAATGATTTGGCTGACCAGATGAGACCAAATGAGACCAAAGCTTACACGGAAGGTTTGGAAGCATCCAGACGTAAAAGTTCCCAATCTGAGGCTTGGACTGTGAGTTTTAACCAGTCACCAAAGCAGAAGAATTCTGGTAAGGAGAAAGCTAAGGAAGGTGAACCAGGATGTTTGCAAACAAACAAGACTCTTGCATCTCCAAGCCAATCGCCTGAAGTAAGCGAAGTGGAGGTGGGAACAAAGGATGACTGGACAACTCATCTGTCACTcacaacacaaagaaaacaaaaatccaCCTCCAGTACAACTGCAAAGCAGACTGGTCATCGAGTGCGTAGCAAGTCAGAACTCCCCCTGTTGGGTCAAGAGAGTGCCCTGCCACATCATGATCAGAACACATCGTGCTCTAAAGCAATGACAGCCGAAGAGCCCTCACAGAAATTGCCTGTGCATTTGCTTAAACAGGAACCGACTGCAAAAGAAGACCCTAAAGGAAAAGTTGTAAGCAAGGTTCCAAAGCATGCACAAGGCATCCAGGGTACCATGAGATATGCAGAACTTTCACAGACCTTGCAAGGCTACCTCCGATACACAACAGCCAAGATCACCTACTGCATACCTGATGGCATCCAGGGGGAAGCGGATCCTAACCCTGGGTCACCATTCAAAGGAGGTGTATTTGAGGCTTATTTGCCACTTAATCCAGTAGGACAGGCCTTACTCCCAAAACTGGAGAAAGCTTTTAAGCAAGGGCTATCCTTCAGagttttccccccaaaaaatggaGAGGACGGCCCAGCACGAATATGGTGGAATCGAATTATTCCTCATAAGACCAAGATGGAAGGAGGGAAGAGTGGAAATGGATATCCAGACTCATCCTATCTGTCCCTCTTATCTGAGGCACTGAAGATCTATGGGATAAAAGACTGAAAATGCTGACTGAAACTATGATCCAACCATATTCATCAATATACTGTCTATAGTCTTTCAAGATAGAGATTTTTTAGAATCATGTGTATATCAAGTCAAGAATGTATACATTTACAATCAATGtcaagatttttaaaattttatacatatataaattttataagtatatatacTACTAGTCAAAGTTTCTTTAGAACACCGCTGTTGTTTAGTGGTCCAGTAGCAGACAAGCTGCATGCTTCTCTCTTGTACTCACAcgtctcttggtgcagctgtgcagctatagctgtatcagttttctccagtttaaaAGAGTCTTTTAAAGGTTGTGTAAATGTTGAAGTAGAGAGTGCAGTtttaatactgctttactacagacaaaggctttgtaaattctcatttttaaataaatttccaAAGCAAAGTATATTTACATTGCTACTGACCAGCTTTAAGCTATTAACCAATGACttgtctttcatttttttacagtatacatttcatcttgttttttacaatatacagttTCCTTTCTTta

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665006.1 False 4192 mRNA 0.45 6 949339 958431
XM_022665007.1 True 4213 mRNA 0.45 6 949304 958431

Neighbor

gene id symbol gene type direction distance location
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 25018 911459 ~ 924286 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding upstream 39148 892095 ~ 910156 (+)
LOC103033788 slc4a1 coding upstream 59515 864849 ~ 889789 (+)
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 692301 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 937541 283 ~ 11763 (+)
LOC103035075 NA coding downstream 2850 961281 ~ 964439 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding downstream 77915 1036346 ~ 1076555 (+)
LOC103044572 NA coding downstream 375909 1334340 ~ 1350920 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 886549 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 1590719 2549150 ~ 2688790 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding upstream 17708 928770 ~ 931596 (+)
G296640 NA non-coding upstream 29801 848130 ~ 919503 (+)
G296629 NA non-coding upstream 144177 804892 ~ 805127 (+)
G296616 NA non-coding upstream 234543 707871 ~ 714761 (+)
G296607 NA non-coding upstream 244235 636029 ~ 705069 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding downstream 7011 965442 ~ 1053569 (+)
G296660 NA non-coding downstream 151857 1110288 ~ 1111113 (+)
G296754 NA non-coding downstream 268964 1227395 ~ 1230550 (+)
G296768 NA non-coding downstream 337814 1296245 ~ 1300826 (+)
G296791 NA non-coding downstream 415402 1373833 ~ 1375344 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 115246 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 908413 36833 ~ 40891 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 233332 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 329085 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 400681 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2084001 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2591896 3550327 ~ 3640614 (+)

Expression


Co-expression Network