LOC111191042 (LOC108432083)


Basic Information

Item Value
gene id LOC111191042
gene name LOC108432083
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2768664 ~ 2925185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665042.1
CACGCGGCAAgtgcagagagagtgtgtgtaagtgtaagtgtggATGAAGGAAGCGAATAAAGGCTAGGATGCGCGCCGCCTCCTCGCGCCTTCTTGCCCGGGAATTATGCACGTGCGCTCGGCGGACGGCGCGAGCGTGAGCGAGGGAGCGCGCGAGAGATGGAGCGAGTCAAGCCGGCcggaaacagcagcagcagcagcagcagtaataaTAACAAGCGCAAGGATAAGAAGAGCGGCAGGCGCGGGGCTGGGAAAGCTTTATTCAGGAAAAAGTCGCTGAAATCGGTGGGAAGTTTTGTGAATAAGGTCCTCAGGAGTCTGGGGGCTTGGGCTCACAGCGGAGACCCCCCGCCGGACCCGCTGGCGGACCCCGAGGAGGAGGACGACGAGGGCGGCTTCAGAGACGGCGGACCGGCGGCGGCCAGCAGCGGCAGCTCCAAAGAGGACGGACGGGGCGGAGTGCGCGGCTGCCCGCTGCAGCCGAGACTCTCCACCGCCGCCGCAGCCAAAGAGAAGGACAGGCTGCCGCCGCTGCCGGGCGGAGAAAAGGACAAAACCCCCGGAGTTCTCGGCTTGAAGAACCACGGGAACACCTGCTTCATGAACGCCGTGGTCCAGTGCCTGAGCAACACCGACCTGCTGGCCGAGTACCTGGGTCTGGAGCGGTACAAGTCGGACCTGAGCCGCGGGAGAGGAGCGGTGATAAGCGGGGAGGAGGACCCGCAGCATGGAGCTGCAGGAACCGGGGCTGGAGTTGGAGAAGTTACCGAGCAGCTGGCCGCTCTAGTGAGGGCGCTGTGGACGCTGGAGTACACCCCTCAACTATCCGTGGAGTTTAAGATGATCGTGTCCAAGTACGGAGCGCAGTTCAGAGGGAATTCCCAGCATGACGCTCTGGAGTTCCTGCTGTGGCTGCTGGACCGGATACACGAGGACGTCAACTCATCTTCCTCGTCTTCCTCGTCCACCTGTGGAAACAACAGGAGCAAGGGTCTGGCTGGAGGAGAAGAAACTACAGCGTCTGAGTATCCAAACCATGACCAGCCTGGAGTACGCCACAGCTTCGTACAGGAGCACTTCCAGGCCCAGTACAAGTCGTCTCTGACATGCCCACATTGCCTTAAGCAGAGTCACACCTTTGATCCTTTCCTGTGTATCTCTCTTCCCATCCCTCTACGCCAAACCAGgCCGCTGTGTGTGACCCTGGTGTTCAGCAGTAAAGGGCAGCGGTATCTGAGAGTGGGGCTGGCGGTTCCTTTGTTCGGTTCTCTGGTTTGTCTTCGCAGGATGGTGGCAGACGAGGGCAAGATTTCACCTGACCAGgTGATTTTAACAGAAATCTACACTACTGGTTTCCAGCGCTCATTTTTTGATGAGGATGACTTGACCAGTATCGCAGAGAGTGACATAATCTATGCCTTCCAAGCCCCGCCCCTTTATATCAGGGGAGGGTCTACTCGAATATCAGGGTACCATCACAGCCTCCCCTCCTCACCGTACTCCTCATCAGGACCTGAGGCTCAGAGACTGGCTGCTTCAGGAGCTCTGTCCTCCGAGTTCCTCCATCAGGGTCCAGGCACAGTGAAGATCCTCCTGCTGGTGTGTAATGCAGCCGGAGCAGGACAGCAGGCCGTCAGGTTTGGTCCTCCATTCTTAATGCGTGAGGACAGGTCAGTGTCGTGGGATCAGCTACAGCAGAGCATCCTCAGCAAGCTCTACTATCTGATGATCAATGGGGCACAGCCACAGAACAACAGAGTGCTGTTTAAGATCCGTGTCGTTGGAGGGTCGTTTTCCTGCAGCTACCTGAGTCCTCAGGATGGACGGCCGCTTTACCACCCTGCAGTAGACAGGGCCCTGAAGCTGTGTGGGTCAGGTGGGCCGCCTCATGTAAAGCTGATCGTTGAGtgggaacacagaataaaagaCTGtctGTTTGGGAACATTCAGGAGGAGGTGGTGAAGGATTCAGAGAGTGTGCgcaatcagcagcagcagcatgttcAACAGCACAGCTGCACGCTGGACGAGTGCTTCCAGCTCTACACGAAGGAGGAGCAGCTGGCTCCTGACGACGCGTGGAAATGCCCGCACTGCAAGCAGCTCCAGCAGGGCACGGTCCAGATGAGCCTGTGGACGCTCCCAGACATCCTCATCCTCCACCTGAAGCGATTCCGGCAGGTGGGCGAACGGAGGAACAAGCTGTCCACGCTGGTCCGGTTCCCTCTGACGGCGCTGGATATGGCGCCTCACATGGTGAAGAGAAGCAACTTCACCCGACTCCCTCCAGGGTGGAAACACCAGCCACAAAGACCCGAAACGGCCCAGCAGGCCCAGGACTTCCTGTACGATCTGTACGCCGTGTGCAACCATCACGGAGGCATGCATGGGGGACACTATACAGCGTTCTGCAGGAACTCAGTAGACGGTCAGTGGTACGGATATGATGACAGCACTGTAGAGCCGGTGCCTGAGGGGGAGGTGTGCACCCGTGGGGCTTATATCCTCTTCTACCAGAGACGCAACAGCATCCCTGCATGGTCAGCCAGCTCCTTTCTTCCAGGTTCTACCAGACCCTGCACGTCTAATCACTGGCTCATCCGTCTGACATCTCTGACAGCCAAGAATCATCCCTCCAGCCCAGCAACCAAGACCTCCAGCTGTTCCTCTGCACCTGAGCCTCAAACACCTACCATTCCAGTCTTCCACGAGCAGTCTGGTAAAGGAGACAGTGATGGATTCGATTCAAGAGCCTTCGTCCGCGGTACCCAGGGCCGCAGTGTGAGCATGCGCTCACCAAGCAAGAACAAGGAAAGTTTAGGCAAGGCGCTTCCTCTACGCTGGTCTTTTGGATCTAAAGACCACAAAAAACCTACTTCTGCCACCAAGGCTGTACCAACTCAGCCTGGAGAACTGGTGGAATACCTGGAATCTGGACGGAGACCACGGTGCACCAAGGAACCCATTGTTGGATTAGTGGCTAGCCCCGCTCAAGTGAAGGCCCAGTTCCAGGAGGGAGACTCGCTAAGCTCCCCTAGTGGCAGCAGTAGCTTTAGCGGAGTGGAACAGGGAAGCTCACCCAGAGTTCCTGAAGGCCAGAGCAGACCAGCTTCAGAACGAGGCTCTGtagctactgctgctgcttctgctgctggaaCTGCTACAACTCTTGCTAAAGGAAGGGGGCTCGATGAGGGCTCGGTTGCCAGACGGAGCTCCAAGCGAAGCAGGCAGGAACAGCATGGCAAGATGACTCAAGATGGTCAGTCCATCATGGTTAGCAGTGCGCCAACTAGTAGAGACTCTACATTGAAGAGACTGTGGAGTCAGCAAGCTGGTGCCAACAGAACTCCTCCTACTCATACTCATACTCAAACCCAACCAGAAAAAGAGgcgactgagaaaatccaagaTGGCGTCCTGTCCTTTTTAAAGATGGGCAGCCAAGCAAAGGCAAAGGAAGGACTTGGGAATAAAGAAACTGGACAAGGAAGAACGCCAACGAATAAGAACCCAACCAAGCTCTCGCTGTCCAATGGAACTCTGAATGGAGTGGTATCAGAAGACAAGAAGTCCAACAGCGCCCATCGTAGCAGCAACGGGCACCACAACAGCAAGGCGCTGGTCATTGGACGGGAACACCACAACGGTTCCGCCAACGGAACTGATATTAAACGAGCTCACAGTTCTTCAAGCATTCAGTCTAGACTGGACTTGAGCTTGAGGAGGACAGTGTCTCTCCAGAAGAACGGGCCGCTCATGCCGGCCCATAAAGCCCTCACTGCAGAAAAACCGTCCTTCGCCACCCTGCAGAGAGCCAGATACAGCACCACCTCACTGGGCAGGCAAAGACCTGTGCCCGAGTCCTGCTTCTGATGTCCAGGTGTTCTGTGTGTATCTACAGTATGGTACTCATGTTTTTGTGGAACATTTTTTTTGACAGTATGTGCCTCCCgttatataacaataatattattattaataataacctCCAA
>XM_022665043.1
CACGCGGCAAgtgcagagagagtgtgtgtaagtgtaagtgtggATGAAGGAAGCGAATAAAGGCTAGGATGCGCGCCGCCTCCTCGCGCCTTCTTGCCCGGGAATTATGCACGTGCGCTCGGCGGACGGCGCGAGCGTGAGCGAGGGAGCGCGCGAGAGATGGAGCGAGTCAAGCCGGCcggaaacagcagcagcagcagcagcagtaataaTAACAAGCGCAAGGATAAGAAGAGCGGCAGGCGCGGGGCTGGGAAAGCTTTATTCAGGAAAAAGTCGCTGAAATCGGTGGGAAGTTTTGTGAATAAGGTCCTCAGGAGTCTGGGGGCTTGGGCTCACAGCGGAGACCCCCCGCCGGACCCGCTGGCGGACCCCGAGGAGGAGGACGACGAGGGCGGCTTCAGAGACGGCGGACCGGCGGCGGCCAGCAGCGGCAGCTCCAAAGAGGACGGACGGGGCGGAGTGCGCGGCTGCCCGCTGCAGCCGAGACTCTCCACCGCCGCCGCAGCCAAAGAGAAGGACAGGCTGCCGCCGCTGCCGGGCGGAGAAAAGGACAAAACCCCCGGAGTTCTCGGCTTGAAGAACCACGGGAACACCTGCTTCATGAACGCCGTGGTCCAGTGCCTGAGCAACACCGACCTGCTGGCCGAGTACCTGGGTCTGGAGCGGTACAAGTCGGACCTGAGCCGCGGGAGAGGAGCGGTGATAAGCGGGGAGGAGGACCCGCAGCATGGAGCTGCAGGAACCGGGGCTGGAGTTGGAGAAGTTACCGAGCAGCTGGCCGCTCTAGTGAGGGCGCTGTGGACGCTGGAGTACACCCCTCAACTATCCGTGGAGTTTAAGATGATCGTGTCCAAGTACGGAGCGCAGTTCAGAGGGAATTCCCAGCATGACGCTCTGGAGTTCCTGCTGTGGCTGCTGGACCGGATACACGAGGACGTCAACTCATCTTCCTCGTCTTCCTCGTCCACCTGTGGAAACAACAGGAGCAAGGGTCTGGCTGGAGGAGAAGAAACTACAGCGTCTGAGTATCCAAACCATGACCAGCCTGGAGTACGCCACAGCTTCGTACAGGAGCACTTCCAGGCCCAGTACAAGTCGTCTCTGACATGCCCACATTGCCTTAAGCAGAGTCACACCTTTGATCCTTTCCTGTGTATCTCTCTTCCCATCCCTCTACGCCAAACCAGgCCGCTGTGTGTGACCCTGGTGTTCAGCAGTAAAGGGCAGCGGTATCTGAGAGTGGGGCTGGCGGTTCCTTTGTTCGGTTCTCTGGTTTGTCTTCGCAGGATGGTGGCAGACGAGGGCAAGATTTCACCTGACCAGgTGATTTTAACAGAAATCTACACTACTGGTTTCCAGCGCTCATTTTTTGATGAGGATGACTTGACCAGTATCGCAGAGAGTGACATAATCTATGCCTTCCAAGCCCCGCCCCTTTATATCAGGGGAGGGTCTACTCGAATATCAGGGTACCATCACAGCCTCCCCTCCTCACCGTACTCCTCATCAGGACCTGAGGCTCAGAGACTGGCTGCTTCAGGAGCTCTGTCCTCCGAGTTCCTCCATCAGGGTCCAGGCACAGTGAAGATCCTCCTGCTGGTGTGTAATGCAGCCGGAGCAGGACAGCAGGCCGTCAGGTTTGGTCCTCCATTCTTAATGCGTGAGGACAGGTCAGTGTCGTGGGATCAGCTACAGCAGAGCATCCTCAGCAAGCTCTACTATCTGATGATCAATGGGGCACAGCCACAGAACAACAGAGTGCTGTTTAAGATCCGTGTCGTTGGAGGGTCGTTTTCCTGCAGCTACCTGAGTCCTCAGGATGGACGGCCGCTTTACCACCCTGCAGTAGACAGGGCCCTGAAGCTGTGTGGGTCAGGTGGGCCGCCTCATGTAAAGCTGATCGTTGAGtgggaacacagaataaaagaCTGtctGTTTGGGAACATTCAGGAGGAGGTGGTGAAGGATTCAGAGAGTGTGCgcaatcagcagcagcagcatgttcAACAGCACAGCTGCACGCTGGACGAGTGCTTCCAGCTCTACACGAAGGAGGAGCAGCTGGCTCCTGACGACGCGTGGAAATGCCCGCACTGCAAGCAGCTCCAGCAGGGCACGGTCCAGATGAGCCTGTGGACGCTCCCAGACATCCTCATCCTCCACCTGAAGCGATTCCGGCAGGTGGGCGAACGGAGGAACAAGCTGTCCACGCTGGTCCGGTTCCCTCTGACGGCGCTGGATATGGCGCCTCACATGGTGAAGAGAAGCAACTTCACCCGACTCCCTCCAGGGTGGAAACACCAGCCACAAAGACCCGAAACGGCCCAGCAGGCCCAGGACTTCCTGTACGATCTGTACGCCGTGTGCAACCATCACGGAGGCATGCATGGGGGACACTATACAGCGTTCTGCAGGAACTCAGTAGACGGTCAGTGGTACGGATATGATGACAGCACTGTAGAGCCGGTGCCTGAGGGGGAGGTGTGCACCCGTGGGGCTTATATCCTCTTCTACCAGAGACGCAACAGCATCCCTGCATGGTCAGCCAGCTCCTTTCTTCCAGGTTCTACCAGACCCTGCACGTCTAATCACTGGCTCATCCGTCTGACATCTCTGACAGCCAAGAATCATCCCTCCAGCCCAGCAACCAAGACCTCCAGCTGTTCCTCTGCACCTGAGCCTCAAACACCTACCATTCCAGTCTTCCACGAGCAGTCTGATGGATTCGATTCAAGAGCCTTCGTCCGCGGTACCCAGGGCCGCAGTGTGAGCATGCGCTCACCAAGCAAGAACAAGGAAAGTTTAGGCAAGGCGCTTCCTCTACGCTGGTCTTTTGGATCTAAAGACCACAAAAAACCTACTTCTGCCACCAAGGCTGTACCAACTCAGCCTGGAGAACTGGTGGAATACCTGGAATCTGGACGGAGACCACGGTGCACCAAGGAACCCATTGTTGGATTAGTGGCTAGCCCCGCTCAAGTGAAGGCCCAGTTCCAGGAGGGAGACTCGCTAAGCTCCCCTAGTGGCAGCAGTAGCTTTAGCGGAGTGGAACAGGGAAGCTCACCCAGAGTTCCTGAAGGCCAGAGCAGACCAGCTTCAGAACGAGGCTCTGtagctactgctgctgcttctgctgctggaaCTGCTACAACTCTTGCTAAAGGAAGGGGGCTCGATGAGGGCTCGGTTGCCAGACGGAGCTCCAAGCGAAGCAGGCAGGAACAGCATGGCAAGATGACTCAAGATGGTCAGTCCATCATGGTTAGCAGTGCGCCAACTAGTAGAGACTCTACATTGAAGAGACTGTGGAGTCAGCAAGCTGGTGCCAACAGAACTCCTCCTACTCATACTCATACTCAAACCCAACCAGAAAAAGAGgcgactgagaaaatccaagaTGGCGTCCTGTCCTTTTTAAAGATGGGCAGCCAAGCAAAGGCAAAGGAAGGACTTGGGAATAAAGAAACTGGACAAGGAAGAACGCCAACGAATAAGAACCCAACCAAGCTCTCGCTGTCCAATGGAACTCTGAATGGAGTGGTATCAGAAGACAAGAAGTCCAACAGCGCCCATCGTAGCAGCAACGGGCACCACAACAGCAAGGCGCTGGTCATTGGACGGGAACACCACAACGGTTCCGCCAACGGAACTGATATTAAACGAGCTCACAGTTCTTCAAGCATTCAGTCTAGACTGGACTTGAGCTTGAGGAGGACAGTGTCTCTCCAGAAGAACGGGCCGCTCATGCCGGCCCATAAAGCCCTCACTGCAGAAAAACCGTCCTTCGCCACCCTGCAGAGAGCCAGATACAGCACCACCTCACTGGGCAGGCAAAGACCTGTGCCCGAGTCCTGCTTCTGATGTCCAGGTGTTCTGTGTGTATCTACAGTATGGTACTCATGTTTTTGTGGAACATTTTTTTTGACAGTATGTGCCTCCCgttatataacaataatattattattaataataacctCCAA

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like

GO: NA

KEGG:

id description
K11856 USP43; ubiquitin carboxyl-terminal hydrolase 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665042.1 True 3998 mRNA 0.56 15 2768664 2925185
XM_022665043.1 False 3983 mRNA 0.56 15 2768664 2925185

Neighbor

gene id symbol gene type direction distance location
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding upstream 79874 2549150 ~ 2688790 (+)
LOC111191061 NA coding upstream 90387 2674748 ~ 2678277 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 647170 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 1417744 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 1692109 1036346 ~ 1076555 (+)
LOC103026062 LOC108432079 coding downstream 239864 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 294744 3219929 ~ 3227171 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 303273 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 407694 3332879 ~ 3342234 (+)
LOC111191052 NA coding downstream 421260 3346445 ~ 3357240 (+)
G297043 NA non-coding upstream 45116 2719907 ~ 2723548 (+)
G297040 NA non-coding upstream 69738 2698710 ~ 2698926 (+)
G297013 NA non-coding upstream 76041 2692022 ~ 2692623 (+)
G297023 NA non-coding upstream 90704 2675575 ~ 2677960 (+)
G297022 NA non-coding upstream 94718 2671700 ~ 2673946 (+)
G297063 NA non-coding downstream 4002 2929187 ~ 2931917 (+)
G297116 NA non-coding downstream 54908 2980093 ~ 2980371 (+)
G297126 NA non-coding downstream 95328 3020513 ~ 3021157 (+)
G297128 NA non-coding downstream 109327 3034512 ~ 3035614 (+)
G297190 NA non-coding downstream 292486 3217671 ~ 3218609 (+)
G296790 tcap,LOC108413611 other upstream 1406729 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1478244 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1567876 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1934606 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2727773 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 117247 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 625142 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1327831 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1494812 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1725458 4650643 ~ 4675621 (+)

Expression


Co-expression Network