LOC103025752 (kpna2,LOC108432045,LOC108261381)


Basic Information

Item Value
gene id LOC103025752
gene name kpna2,LOC108432045,LOC108261381
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3219929 ~ 3227171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665047.1
AGTTTCCGCAGCTCATTTCCACAGGAGAGAGGCGgTTTATTATTTTCAGCTTGATTTTGATCACCTCTTGCTGCTCTTCAAAATGTCTGCTGCTGCCAACGAGAACACTGCTCGTCTGACCCAGttcaaaaataaaggaaaagatACTACAGAGCTCAGGCGAAGGAGGATCGAGGTCAATGTCGAGCTTCGAAAAGCAAAGAAGGATGACCAGATTATGAAGAGGAGAAATGTTGCTGTTCTCCCAGATGAAGTTACGTCACCTCTGCAGGAGAAAAGTCAGAACTGCCAGGCTCAGCACTGGACAGTGGAAGAGATTGTAAATGGAGTAAACAGTAACAATCTGGAAACTCAAACGCAAGCAACCCAAGCAGCCAGGAAACTGCTTTCAAGAGAGAGGCATCCACCAATCGACCGAATCATCAGCGCCGGCCTGATCCCCAGGTTTGTGGGCTTCCTAGGCATCGATTCTCCCCCGATCCAGTTCGAAGCGGCCTGGGCTCTGACTAACATTGCATCTGGAACGTCTGACCAGACCGCTGCGGTTGTGGAAGGAGGGGCTATCCCAGCTTTCATTGGGCTGATTTCATCCCCTCATCCTCACATTAGTGAACAAGCTGTTTGGGCTCTGGGCAATATTGCTGgtgaTGGTTCTTCCTATAGAGACAAGGTCATCAAGCACGGTGCTATTCCTCCACTTCTGAGTCTGCTTGCTGTCCCAGATCTTTCTGTGTTTGCATCTGGTTACCTGAGGAATCTCACCTGGACGTTGTCTAACCTGTGCCGCAACAAGAACCCTGCACCTCCTCTGGAAGCTGTACGGCAGATCCTGCCAACCATCATCCGTCTCCTTCATCACAATGATAAGGAGGTGCTGGCAGACACCTGCTGGGCGGTCTCGTATCTTACAGATGGTCCGAACGACAGGATTGAAGTGGTGGTCCAGACTGGTGTGGTTCCTCGTTTGGTACAGCTGCTCGGCTCTGGAGAGCTGTCCATTGTGACTCCCTCACTGCGCTCTATTGGCAATATTGTAACTGGCACAGATGAGCAGACCCAGGCAGTGCTGGATTCAGGAGCTCTCCCAATGTTCACCAACCTGTTACGGCACCACAAAAACAACATCCAGAAGGAGGCTGCCTGGGCCATGTCCAACATCACTGCAGGCAAGGACACGCAGATCCAGGAGGTCATCAACGCTGGCCTGGTGCCCCACCTAGTGGAGGTTCTCAAGCGGGGTGACTACAAGACCCAGAAagaggcagtgtgggcagtgacCAACTTCACCAGTGGAGGCACCATAGAACAAGTTATTTACCTTGTTCAGGCCAATGTGCTGGAGCCACTGCTCAATTTACTGTCTGTGAAGGACAGCAAAACCATTCTAGTAATTTTGGATGCAATCAGCAACATCTTTCTGGCTGGTGAGAAGATTGGCGAGACTGATAAGCTGTGTCTGATGATTGAAGAATGTGGAGGCTTGGATAAAATCGAAGCCCTGCAGACCCATGAGAATGAAATGGTGTACAAAGCCTCACTCAACCTCATTGAGAAATACTTTTCTGGAGAGgaggaagaggatgaaTGTGTGGCTCCTGAAGTTACAACCGATGGCTATGCGTTCCAGATTAATGACAACCAAGGCACTTTCAACTTCTAAACCTCTTCTGTCCCTGCTCCTGTTGTGCGGATGTGTTCTATATGTTCTGTCTTCTTGTTCAGTGTTTGTGATGTGATGGGCGTCTCTGTTCTTCAGAATTGTACATATGGAACTGTCCATTTTATtatagtgtaaataaaataaataaacaaatgagaaaca

Function

symbol description
kpna2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Is expressed in proliferative region. Orthologous to human KPNA2 (karyopherin subunit alpha 2).

NR:

description
PREDICTED: importin subunit alpha-1-like

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15043 KPNA2_7; importin subunit alpha-1/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665047.1 True 1822 mRNA 0.49 11 3219929 3227171

Neighbor

gene id symbol gene type direction distance location
LOC103026062 LOC108432079 coding upstream 3740 3165049 ~ 3216189 (+)
LOC111191042 LOC108432083 coding upstream 294744 2768664 ~ 2925185 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding upstream 531139 2549150 ~ 2688790 (+)
LOC111191061 NA coding upstream 541652 2674748 ~ 2678277 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 1098435 1844980 ~ 2121494 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 1287 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 105708 3332879 ~ 3342234 (+)
LOC111191052 NA coding downstream 119274 3346445 ~ 3357240 (+)
LOC103038127 LOC103358682 coding downstream 135263 3362434 ~ 3403563 (+)
ilf3 ilf3,LOC107659573 coding downstream 347462 3574633 ~ 3595371 (+)
G297190 NA non-coding upstream 1320 3217671 ~ 3218609 (+)
G297128 NA non-coding upstream 184315 3034512 ~ 3035614 (+)
G297126 NA non-coding upstream 198772 3020513 ~ 3021157 (+)
G297116 NA non-coding upstream 239558 2980093 ~ 2980371 (+)
G297063 NA non-coding upstream 288012 2929187 ~ 2931917 (+)
G297203 NA non-coding downstream 78998 3306169 ~ 3312518 (+)
G297214 NA non-coding downstream 118923 3346094 ~ 3375734 (+)
G297217 NA non-coding downstream 121571 3348742 ~ 3410812 (+)
G297218 NA non-coding downstream 184085 3411256 ~ 3412085 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 434072 3661243 ~ 3664579 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 71326 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 1857994 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1929509 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2019141 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2385871 826378 ~ 834058 (+)
LOC103030733 NA other downstream 323156 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1025845 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1192826 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1423472 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2475341 5702512 ~ 5711874 (+)

Expression


Co-expression Network