rnd2 (rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027)


Basic Information

Item Value
gene id rnd2
gene name rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1036346 ~ 1076555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665048.1
CCGCGCGGCCCCACACAAAGGAATGAATGAGAACAAAGGCGAGGAATTAGCGCCGTCTGGGGATTTGATTGGACGGCGGGGGTTCTGTGGGTGTGGTTATGCAGATTAAGGGGCGGGGTGCGACCCACTCGCCAGACTGGAGACGCGAAGTGTCAAAAGGGAGCGAGCGCGGTGTCACCGTGGGAAAGGAGAGGCTGCGCGTGCTCTCtgtctctatacctctctctttcatatAGTTCTCTTTTCTTACTCTTTCTACcgggtttttttttgcttttttttcccctctcccttgttttttgtcctttttctctctctctgactcagtTCTCTCTGGATTCAGACAGACAGCTGCACTCTGTCCGCGCTcgtctcgctctctcactccctcaggACTATTTTACACTTTCTGCCCTCCCACCTTCTCACCcaccgccgctgctgctgctgctgacagcGGTCTCCCCGGTGGTCGCGGTCCGGAGCGGGTGATGGAAGGGAAGGGCAGCCGCTGTAAGATCGTGGTGGTGGGCGACACTCAGTGTGGCAAGACGGCGCTGCTGCACGTGTTCGCTAAGGACAGCTACCCTGAGAGTTATGTGCCCACCGTCTTTGAGAACTACACAGCAAGCTTTGAGATAGACAAACACCGGATTGAGCTGAATATGTGGGACACGTCAGGCTCCTCCTACTATGACAACGTGCGACCGCTGGCATATCCAGACTCTGATGCTGTACTCATCTGTTTCGACATCAGCAGGCCAGAGACTCTAGACAGTGTCCCAAAGAAGTGGCAGGCTGAGGCTCAGGAGTACTGTCCTAATGCTAAGCTAGTGCTGGTTGGCTGTAAGCTTGATATGAGGACAGATGTGAGCACCTTACGAGAACTGTCCAAACAGCGCCTCATACCCGTCACACACGAGCAgggaAGTCTGCAGGCGCGAGAGCTCGGCGCAGTCGCGTACGTGGAGTGCTCGTCGCGCATGTGTGTGAACAGTGTCCGGGACGTCTTTCACATCACCACACTCGCCTCGGTCAGACGACCCGCCCCCGGACTCAAGCGCAGCTCATCCCGCCGCGCCCTCAAACGCATATCCCACCAGCCCCTTCTGCCAATCAGCTCTCGGGCCACACCCCTCGAACCCTCCCCCACTCTCAGAAAGGACAGAGCCAAGAGCTGCATTGTCATGTAGAAAATgagccaaaacacacacaaacacacacacacacacacacacacacactctaacacattCAGCTGTGTTCTGATCTCATCTTTGTAAAATGGGTTCTCACAGCTGCTGTCTATTTATGAGACTCTTCTGGTCGTACATCACGTCCGATTACGACCCATTAAAACTGTATAGATGTGTGAACAGGTTCCACAGAGGACTATTTATTGACCCTTgcattgttgttgttgctgttacTATTTTTTGGCGGACGCCACAGAGTAAAGAATGAAGAGGCGactatggagaaaaaaaaaacaacaggtgTGGCATTTACGAGGAtttatttctgaggattttgaCTTTGATTTCAATATCAATTTCAGAATCTAATCGATATCAGAGTTGATAAAAATATCCCAAATGATATTCAAAAGAGCAAAATGTTTTGGTAATGATGAACGACCAAAGtagcacatatacagctctggaaaaaaaaaa

Function

symbol description
rnd2 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RND2 (Rho family GTPase 2).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoN-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07858 RND2; Rho family GTPase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665048.1 True 1673 mRNA 0.51 5 1036346 1076555

Neighbor

gene id symbol gene type direction distance location
LOC103035075 NA coding upstream 71907 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 77915 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 112060 911459 ~ 924286 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding upstream 126190 892095 ~ 910156 (+)
LOC103033788 slc4a1 coding upstream 146557 864849 ~ 889789 (+)
LOC103044572 NA coding downstream 257785 1334340 ~ 1350920 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 768425 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 1472595 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 1598193 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 1692109 2768664 ~ 2925185 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding upstream 104750 928770 ~ 931596 (+)
G296640 NA non-coding upstream 116843 848130 ~ 919503 (+)
G296629 NA non-coding upstream 231219 804892 ~ 805127 (+)
G296616 NA non-coding upstream 321585 707871 ~ 714761 (+)
G296612 NA non-coding upstream 341617 661308 ~ 694729 (+)
G296660 NA non-coding downstream 33733 1110288 ~ 1111113 (+)
G296754 NA non-coding downstream 150840 1227395 ~ 1230550 (+)
G296768 NA non-coding downstream 219690 1296245 ~ 1300826 (+)
G296791 NA non-coding downstream 297278 1373833 ~ 1375344 (+)
G296812 NA non-coding downstream 418663 1495218 ~ 1495445 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 202288 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 995455 36833 ~ 40891 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 115208 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 210961 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 282557 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1965877 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2473772 3550327 ~ 3640614 (+)

Expression


Co-expression Network