LOC103033323


Basic Information

Item Value
gene id LOC103033323
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5702512 ~ 5711874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665055.1
GAGATCTGAGCGGTGAGTGAGCTTCCGTTAGAGCGGCAGAAGCTGTGTTTTTAGCGCAGCTAGCTTAGTTTATagttataaactgtttatatagCGTTAAAAGCGAAGTATTACAGTTCTAGAAATATATAACCttcatatttacacagaaacGCGCGGGGTCGGTGTGTAGCAGCTCGCTGTCCGGGGAAGGCAGGCCAGCTCTCTGATAATGTCAGTTTCTTTGGATGAAGTTATTAAAATGTGCTGCACACAACAGGCAAAACTCACAGAAACCATCAAACAGTGCAGAGATATCCTACACTCCATGAAGGTTCCTGTGATCCATATTAGTGAAGCTGACAGatcagcaagtgtgtgtgtaaaaaatgaagACATTCCTGTAAAAGAACTGCAAGAAATCGATCTATTGGAACAAGTTCTAAAAAAGGCTGTGAAAGTCCGCAGCAGCTCTGCCCTGCTCAAAAACCATGGAGCACAATTACAAGAAAAGAAACCTGTAGAAAACAGCAATCGAGTACCAGTCTCTATCAAAACCACGGCTAAAGATTCTGTtcaaataaaacccaaaaaatcaacACAGCCTGGTCCTGCCAGGAGAGGACCTTCAGCTCAGACCACCGTCAGAGCGAAACCACTGGTAGCGAAACCTGCGACAGTACAGATCTCCAGTACTGCTGTTCAAAAGTCTTCCAGCCAGAGCACCGACTCCAAAACCTCCACTGAGGAGAAGATTATAGCTGGACCACCGACTGACGACATGCAGTTAAAATCAGCAGGACAAGTGTCTCTTCTAAAAGAGCCAATgGTGCTTTCTCCCTGGTTTCCAGTATGGCAAGCGCAAAGGACCAAAAAGAACAGACTGTGGAATAAAGTTCTGAGCCGACACTCCAAGCCGGTACCTGAGCGAACTCACTTTCGAGAGAGACTCAGCAGCACTTTCCCGAAGGATTGGCTCTCTGGACAGGTATCAGTCAGACAGGCGGAGCTGGACTCCCTCACGCAGCTCGGACTGGACCTGAGTCACTGCTACCGCGCCTCGCTCCGGAACCAGCAGCCGCTATCAGCCCGCGGGCCGGGCACCGATCCAGAAGCATCACTGGAGAGGCAGTATGAATCGGTGCTGATGCTGCAGGGACTGGAGAGAATGATGATCGGAGTCATTAAAGAAGGAGACCGCCTTAAAAAAGAGTCTGAGAGGAACACCGGGGGGGCATTATTTCCAGTCCGAAGGAGAAGTACGTGGTCCTGTCTGCCCCCTCTACTGTCCTACAGCACTGAAGCAGAGCTGGAGGAGCTGAACACGCTACAGCTGAGAGTAAATCAGCTTCAGCTGGAGATTCACCTGCACCAGgcCATGTCTGACACCCTTACACATCCTCAGTGCTCCATACCTGGCTCTCTGAGTGCTGCTTCACTGCGGGGTCTGTATTCACTGCTTGGAGAGGGAGGAGCACAGTTTCCTACACTAGTTCTGGACTCTGAACCTCAacagacataaaaaataaagactgaTGGTCAGTAAAGCAGCTGGACTTCAGGTCACATATGATTAATGTGATTATGTGAACCATTAACACAAAAAATGGACCGTTTTAGGACCCTGAGATGTGATGGGAGGGGATCATCTTAAACGCTGAACTAgaagatatttatttttgcagttttctttctttctttgcgtgtgtaagtgtgtgagacagCTGTGTGTGCGGAAAGGCTGTTATCTGCTGTGATAAACGCTCGATCTGAGAGCTGCAGCTGTTCTGATAGAGCAGAATGAATAAATCTGCCAGCTGCTCATCTTTTGTCATTAATGGCTCGTTCTTCTGCTCACTGCGGGTTTTAATCACTGCTGGAGATAATTTTCAGGCTTTTCAGCTTTTTAACAGCTGTTACTGACGACCAGAACTGAATTTGTAGCTCAGGGAGATCAGTGATgctttatattatgtatttttatggtAGGTTTTCACCAGTAGAGGCCActgtattactgtttttatcaatacTTATTTGGTCAGTCCTTAAAAGCCAGTTCTCTTGTGGTGcgtgtgtgttgttttctgttttacatcCTTAAAGAGTGATTTGACTGGTCAATAAGCTAATGTGAATGGTCCTTTTGAGTTTTAAAGGAGAGAATGCATTAAAACTGCAAAATAAATGTGGTTTAAAATGA
>XM_022665056.1
GCGAGAGCGTCCCCGTTTCCATTAGCAACCAGCTGTCCTCGCGAGATCTGAGCGGCAGGCCAGCTCTCTGATAATGTCAGTTTCTTTGGATGAAGTTATTAAAATGTGCTGCACACAACAGGCAAAACTCACAGAAACCATCAAACAGTGCAGAGATATCCTACACTCCATGAAGGTTCCTGTGATCCATATTAGTGAAGCTGACAGatcagcaagtgtgtgtgtaaaaaatgaagACATTCCTGTAAAAGAACTGCAAGAAATCGATCTATTGGAACAAGTTCTAAAAAAGGCTGTGAAAGTCCGCAGCAGCTCTGCCCTGCTCAAAAACCATGGAGCACAATTACAAGAAAAGAAACCTGTAGAAAACAGCAATCGAGTACCAGTCTCTATCAAAACCACGGCTAAAGATTCTGTtcaaataaaacccaaaaaatcaacACAGCCTGGTCCTGCCAGGAGAGGACCTTCAGCTCAGACCACCGTCAGAGCGAAACCACTGGTAGCGAAACCTGCGACAGTACAGATCTCCAGTACTGCTGTTCAAAAGTCTTCCAGCCAGAGCACCGACTCCAAAACCTCCACTGAGGAGAAGATTATAGCTGGACCACCGACTGACGACATGCAGTTAAAATCAGCAGGACAAGTGTCTCTTCTAAAAGAGCCAATgGTGCTTTCTCCCTGGTTTCCAGTATGGCAAGCGCAAAGGACCAAAAAGAACAGACTGTGGAATAAAGTTCTGAGCCGACACTCCAAGCCGGTACCTGAGCGAACTCACTTTCGAGAGAGACTCAGCAGCACTTTCCCGAAGGATTGGCTCTCTGGACAGGTATCAGTCAGACAGGCGGAGCTGGACTCCCTCACGCAGCTCGGACTGGACCTGAGTCACTGCTACCGCGCCTCGCTCCGGAACCAGCAGCCGCTATCAGCCCGCGGGCCGGGCACCGATCCAGAAGCATCACTGGAGAGGCAGTATGAATCGGTGCTGATGCTGCAGGGACTGGAGAGAATGATGATCGGAGTCATTAAAGAAGGAGACCGCCTTAAAAAAGAGTCTGAGAGGAACACCGGGGGGGCATTATTTCCAGTCCGAAGGAGAAGTACGTGGTCCTGTCTGCCCCCTCTACTGTCCTACAGCACTGAAGCAGAGCTGGAGGAGCTGAACACGCTACAGCTGAGAGTAAATCAGCTTCAGCTGGAGATTCACCTGCACCAGgcCATGTCTGACACCCTTACACATCCTCAGTGCTCCATACCTGGCTCTCTGAGTGCTGCTTCACTGCGGGGTCTGTATTCACTGCTTGGAGAGGGAGGAGCACAGTTTCCTACACTAGTTCTGGACTCTGAACCTCAacagacataaaaaataaagactgaTGGTCAGTAAAGCAGCTGGACTTCAGGTCACATATGATTAATGTGATTATGTGAACCATTAACACAAAAAATGGACCGTTTTAGGACCCTGAGATGTGATGGGAGGGGATCATCTTAAACGCTGAACTAgaagatatttatttttgcagttttctttctttctttgcgtgtgtaagtgtgtgagacagCTGTGTGTGCGGAAAGGCTGTTATCTGCTGTGATAAACGCTCGATCTGAGAGCTGCAGCTGTTCTGATAGAGCAGAATGAATAAATCTGCCAGCTGCTCATCTTTTGTCATTAATGGCTCGTTCTTCTGCTCACTGCGGGTTTTAATCACTGCTGGAGATAATTTTCAGGCTTTTCAGCTTTTTAACAGCTGTTACTGACGACCAGAACTGAATTTGTAGCTCAGGGAGATCAGTGATgctttatattatgtatttttatggtAGGTTTTCACCAGTAGAGGCCActgtattactgtttttatcaatacTTATTTGGTCAGTCCTTAAAAGCCAGTTCTCTTGTGGTGcgtgtgtgttgttttctgttttacatcCTTAAAGAGTGATTTGACTGGTCAATAAGCTAATGTGAATGGTCCTTTTGAGTTTTAAAGGAGAGAATGCATTAAAACTGCAAAATAAATGTGGTTTAAAATGA
>XR_002649334.1
GAGATCTGAGCGGTGAGTGAGCTTCCGTTAGAGCGGCAGAAGCTGTGTTTTTAGCGCAGCTAGCTTAGTTTATagttataaactgtttatatagCGTTAAAAGCGAAGTATTACAGTTCTAGAAATATATAACCttcatatttacacagaaacGCGCGGGGTCGGTGTGTAGCAGCTCGCTGTCCGGGGAAGGCAGGCCAGCTCTCTGATAATGTCAGTTTCTTTGGATGAAGTTATTAAAATGTGCTGCACACAACAGGCAAAACTCACAGAAACCATCAAACAGTGCAGAGATATCCTACACTCCATGAAGGTTCCTGTGATCCATATTAGTGAAGCTGACAGatcagcaagtgtgtgtgtaaaaaatgaagACATTCCTGTAAAAGAACTGCAAGAAATCGATCTATTGGAACAAGTTCTAAAAAAGGCTGTGAAAGTCCGCAGCAGCTCTGCCCTGCTCAAAAACCATGGAGCACAATTACAAGAAAAGAAACCTGTAGAAAACAGCAATCGAGTACCAGTCTCTATCAAAACCACGGCTAAAGATTCTGTtcaaataaaacccaaaaaatcaacACAGCCTGGTCCTGCCAGGAGAGGACCTTCAGCTCAGACCACCGTCAGAGCGAAACCACTGGTAGCGAAACCTGCGACAGTACAGATCTCCAGTACTGCTGTTCAAAAGTCTTCCAGCCAGAGCACCGACTCCAAAACCTCCACTGAGGAGAAGATTATAGCTGGACCACCGACTGACGACATGCAGTTAAAATCAGCAGGACAAGTGTCTCTTCTAAAAGAGCCAATgGTGCTTTCTCCCTGGTTTCCAGTATGGCAAGCGCAAAGGACCAAAAAGAACAGACTGTGGAATAAAGTTCTGAGCCGACACTCCAAGCCGGTACCTGAGCGAACTCACTTTCGAGAGAGACTCAGCAGCACTTTCCCGAAGGATTGGCTCTCTGGACAGGTATCAGTCAGACAGGCGGAGCTGGACTCCCTCACGCAGCTCGGACTGGACCTGAGTCACTGCTACCGCGCCTCGCTCCGGAACCAGCAGCCGCTATCAGCCCGCGGGCCGGGCACCGATCCAGAAGCATCACTGGAGAGGCAGTATGAATCGGTGCTGATGCTGCAGGGACTGGAGAGAATGATGATCGGAGTCATTAAAGAAGGAGACCGCCTTAAAAAAGgaaattaCTTTTATGTCTCTCAGAGTCTGAGAGGAACACCGGGGGGGCATTATTTCCAGTCCGAAGGAGAAGTACGTGGTCCTGTCTGCCCCCTCTACTGTCCTACAGCACTGAAGCAGAGCTGGAGGAGCTGAACACGCTACAGCTGAGAGTAAATCAGCTTCAGCTGGAGATTCACCTGCACCAGgcCATGTCTGACACCCTTACACATCCTCAGTGCTCCATACCTGGCTCTCTGAGTGCTGCTTCACTGCGGGGTCTGTATTCACTGCTTGGAGAGGGAGGAGCACAGTTTCCTACACTAGTTCTGGACTCTGAACCTCAacagacataaaaaataaagactgaTGGTCAGTAAAGCAGCTGGACTTCAGGTCACATATGATTAATGTGATTATGTGAACCATTAACACAAAAAATGGACCGTTTTAGGACCCTGAGATGTGATGGGAGGGGATCATCTTAAACGCTGAACTAgaagatatttatttttgcagttttctttctttctttgcgtgtgtaagtgtgtgagacagCTGTGTGTGCGGAAAGGCTGTTATCTGCTGTGATAAACGCTCGATCTGAGAGCTGCAGCTGTTCTGATAGAGCAGAATGAATAAATCTGCCAGCTGCTCATCTTTTGTCATTAATGGCTCGTTCTTCTGCTCACTGCGGGTTTTAATCACTGCTGGAGATAATTTTCAGGCTTTTCAGCTTTTTAACAGCTGTTACTGACGACCAGAACTGAATTTGTAGCTCAGGGAGATCAGTGATgctttatattatgtatttttatggtAGGTTTTCACCAGTAGAGGCCActgtattactgtttttatcaatacTTATTTGGTCAGTCCTTAAAAGCCAGTTCTCTTGTGGTGcgtgtgtgttgttttctgttttacatcCTTAAAGAGTGATTTGACTGGTCAATAAGCTAATGTGAATGGTCCTTTTGAGTTTTAAAGGAGAGAATGCATTAAAACTGCAAAATAAATGTGGTTTAAAATGA

Function

GO:

id name namespace
GO:0017038 protein import biological_process
GO:0006259 DNA metabolic process biological_process
GO:0033365 protein localization to organelle biological_process

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665055.1 False 2182 mRNA 0.46 10 5702554 5711874
XM_022665056.1 False 2044 mRNA 0.46 10 5702512 5711874
XR_002649334.1 True 2205 misc_RNA 0.46 10 5702554 5711874

Neighbor

gene id symbol gene type direction distance location
dnaja3 LOC108431932 coding upstream 36083 5656766 ~ 5666429 (+)
glis2 glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641 coding upstream 251120 5415197 ~ 5451392 (+)
LOC103026631 NA coding upstream 345633 5348375 ~ 5356879 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding upstream 357994 5278162 ~ 5344518 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding upstream 432410 5229044 ~ 5270102 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding downstream 7195 5719069 ~ 5719464 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 31914 5743788 ~ 5761476 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding downstream 53125 5764999 ~ 5828725 (+)
LOC103034280 LOC108438908,LOC108276786 coding downstream 124631 5836505 ~ 5851771 (+)
LOC111191062 LOC108438908,LOC108276786 coding downstream 155240 5867114 ~ 5884363 (+)
G297916 NA non-coding upstream 15963 5685435 ~ 5686549 (+)
G297910 NA non-coding upstream 77643 5623718 ~ 5624869 (+)
G297904 NA non-coding upstream 90087 5604189 ~ 5612425 (+)
G297903 NA non-coding upstream 99633 5601099 ~ 5602879 (+)
G297902 NA non-coding upstream 101499 5600192 ~ 5601013 (+)
G297926 NA non-coding downstream 18556 5730430 ~ 5731876 (+)
G297930 NA non-coding downstream 46477 5758351 ~ 5762495 (+)
G297933 NA non-coding downstream 55648 5767522 ~ 5834140 (+)
G297936 NA non-coding downstream 115237 5827111 ~ 5828278 (+)
G298007 NA non-coding downstream 153663 5865537 ~ 5890766 (+)
LOC111191039 NA other upstream 1026891 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1268441 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1403065 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 2061898 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2553909 3042432 ~ 3148603 (+)

Expression


Co-expression Network