cnn1 (cnn1,cnn1b,LOC107715638,LOC107718633)


Basic Information

Item Value
gene id cnn1
gene name cnn1,cnn1b,LOC107715638,LOC107718633
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4323111 ~ 4346597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665057.1
TGCGCTGCGAGGCGCCTCCTAACGCACGAGGACAGGAGTTACCAGTGTTTCCTTCTGCACGAGCTCCATCAACCCCCCGCCCGCACGCGCTCaggctactactactactgtccGCGCTCGTGCTCCGTTCAGCTCGACCTCAGTATGGCACAGCAGCACTTCAGGAGCGGCCCGGCCTTCGGTCTGTCCGCAGAGGTCAAGAGCAAgCTGGCCCAGAAGTACGACCCCcagaaggaggaggagctcAGGCTGTGGATTAACGAGGTGACGGGACGCAAGGTTCCAGACAACTTCATGGAGGGCCTGAAGGATGGAGTCACCCTCTGCGAGCTTATCAACGCTCTCCAGCCCGGCACGGTGAGAAAGATCAACAACTCCTCTCAGAATTGGCACCAGCTGGAGAACATCGGGAACTTCGTCCGGGGAATCCAGGAGTATGGCTTAAGGCCACATGACATCTTCGAGGCCAATGACCTGTTTGAGAACGTCAACCACACTCAGGTTCAGAGCACCCTGATTGCTCTGGCTGGGATGGCCAAGTCCAAAGGCCTCCGCACTAAATACGACATCGGGGTGAAGTACGCCGAGAAACAGCAGCGCAGGTTTGCCCCCGAGAAACTGAAGGAAGGACGCAACATCATCGGCCTGCAGATGGGAACCAATAAGTTTGCCAGCCAGAAGGGAATGACATCATACGGCACACGGCGTCACCTGTATGACCCCAAAGTTGGCATGGAGAATCCCCTGGACCAGTCAACAATTAGCCTGCAGATGGGAACCAACAAAGGAGCCAATCAGTCTGGAATGACCGCACCCGGCACCAAGCGCCAGATCTTTGATAAGAAGCTGGACATGGAGAGCTGTGACACCGCCACCGTCTCGCTGCAGATGGGCACCAACAAGGTGGCGTCTCAGTCCGGCATGACGGTCTACGGCCTCCCGCGCCAAGTCTACGACAGGAAGTACTGCACCTACTCCGAAGACTACATGGACAACGGCCAGGACGTGCGGGAGATTGATGGATACCAGTACTCTGATTAAGCCACATGGACTGCTATCCCACACACTGCTTtaattcttctgttttttttttctttatttcacttACTGTtgcttttaaaatttatttaaaagtcgAAAAAACACGAAAAACGCCCAAACTGTTGCCGTAGCAACCACGACCAACCACGACCAATCACAACCAACCAACCGAAGGTTGACCAAAGCTGAAGCGTAGGTCTGCTATGGCTGATTAGTTTTGCCACTGGCTGCTAATATTTCTGCTTCTCACTCAGAGTAGATgttataaaattttatattttttatttttgagtattTGAGTTTGTAGCAGCCTCTTCTCACCTGATTTGCATGACTTGCATTCTGTttacaggaaaaggaaaaaaaaaa

Function

symbol description
cnn1b Predicted to enable actin binding activity. Predicted to act upstream of or within actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human CNN1 (calponin 1).
cnn1 Predicted to enable actin binding activity. Involved in negative regulation of vascular associated smooth muscle cell proliferation. Located in cytoskeleton.

NR:

description
PREDICTED: calponin-1

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665057.1 True 1410 mRNA 0.52 7 4323111 4346597

Neighbor

gene id symbol gene type direction distance location
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding upstream 163649 4080149 ~ 4159462 (+)
LOC103046751 LOC108432062 coding upstream 497471 3776523 ~ 3825640 (+)
LOC103025262 LOC108432064,LOC108256459 coding upstream 556624 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 671776 3645713 ~ 3651335 (+)
farsa farsa coding upstream 702284 3596527 ~ 3620827 (+)
tmem205 tmem205 coding downstream 10390 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 21121 4367718 ~ 4392866 (+)
epor NA coding downstream 55043 4401640 ~ 4414691 (+)
LOC103021497 NA coding downstream 140307 4486904 ~ 4508485 (+)
LOC111191035 LOC108412261,LOC108278278 coding downstream 164812 4511409 ~ 4598805 (+)
G297497 NA non-coding upstream 47288 4215295 ~ 4275823 (+)
G297405 NA non-coding upstream 156549 4127521 ~ 4166562 (+)
G297394 NA non-coding upstream 189247 4011777 ~ 4133864 (+)
G297407 NA non-coding upstream 231811 4090911 ~ 4091300 (+)
G297398 NA non-coding upstream 297751 4025049 ~ 4025360 (+)
G297516 NA non-coding downstream 6056 4352653 ~ 4355964 (+)
G297529 NA non-coding downstream 71379 4417976 ~ 4418769 (+)
G297530 NA non-coding downstream 84736 4431333 ~ 4435857 (+)
G297531 NA non-coding downstream 89469 4436066 ~ 4436423 (+)
LOC111191027 NA non-coding downstream 93747 4440344 ~ 4443094 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 23664 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 682497 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1174508 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2961176 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 3032691 1287516 ~ 1290420 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 73400 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 304046 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1355915 5702512 ~ 5711874 (+)

Expression


Co-expression Network