LOC111191046


Basic Information

Item Value
gene id LOC111191046
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3645713 ~ 3651335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665062.1
gctggatatttttgttggacctgacctggcaaccctggccgTTACTGAGCTGCGTCGCGTGCGGTTGTGGAGACGGTTGGAAATGCTAGGCTAACTCCAGCACGGAAGGTCATGGCTCAGCACTTCTTTGGACACCCTGGCTCCGCTACATTTCAGTCCACACCTAAAGCAGGTCCTCAGCGTGTCCCAGTGAAGgCGGCAGAAGAGGGGCAGAACATAGACTACGACTCGACAGGTGAAACACTGTCATTTGTAACCCTGGATGATAGTCATGAGCAGCAAAGTGAGGATTCAGGCATCAACATATCAAGTAGAAGTTCACCTGTAACTGTTCCCGTGGATGATAGCATTGTTTCCAGCCCTGTTGCTTCAAGAATAGATGAGATTGGGAAGAAAGCGCAAGATCTTATTGAAAGGATCAACCAGAGCAGAGCCATGGATCAGAAGATCTTAAACAGCTTTGAGGAAAAGCTAATGCAGAAGGTGGGTGAGATGTGTCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGATAAGCACAGTCAGGGGATGGAGGTCAGGCTCACTGAACTATCAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTGCAAGGAGCCAGCCAGACACTGGCAGCCATCAACAAAGGTCTGCAGCAAACGGGTCAATAgattatatattactatattgcTCATAATACTTCCACAGCCCTGTCTACCTTAAAGCCATGATATGCTAATCTACATTGAAATTATATAGAAATGGTTTGGATTGTTATTATGGGATGACAACAGCGTACTATTGATTTAATGTATCTAGCAAATCTCGTCAGTGAAAAGATGGGATTctctaaataatttacaaagaTAAGATTTCTTGGCCAGAGGTCTGATAGATTGACATCAGAAAATAGAAtttaaatctacacagtttGCAAGGCAGACTTGTCAGCATAGCAGCTAAAAGACGAATATAAAAGATGTACGAtgta

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665062.1 True 995 mRNA 0.44 5 3645713 3651335

Neighbor

gene id symbol gene type direction distance location
farsa farsa coding upstream 24886 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 50342 3574633 ~ 3595371 (+)
LOC103038127 LOC103358682 coding upstream 242150 3362434 ~ 3403563 (+)
LOC111191052 NA coding upstream 288473 3346445 ~ 3357240 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding upstream 303479 3332879 ~ 3342234 (+)
LOC103025262 LOC108432064,LOC108256459 coding downstream 53469 3704804 ~ 3766487 (+)
LOC103046751 LOC108432062 coding downstream 125188 3776523 ~ 3825640 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 428814 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 671776 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 705652 4356987 ~ 4363604 (+)
G297218 NA non-coding upstream 233628 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 234901 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 269979 3346094 ~ 3375734 (+)
G297203 NA non-coding upstream 333195 3306169 ~ 3312518 (+)
G297190 NA non-coding upstream 427104 3217671 ~ 3218609 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 9908 3661243 ~ 3664579 (+)
G297318 NA non-coding downstream 42363 3693698 ~ 3697530 (+)
G297369 NA non-coding downstream 126571 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 175433 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 214605 3865940 ~ 3886107 (+)
LOC103030733 NA other upstream 5099 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 497110 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2283778 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2355293 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2444925 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 601681 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 768662 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 999308 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2051177 5702512 ~ 5711874 (+)

Expression


Co-expression Network