LOC103028117 (crhr1,LOC108413653,LOC107662410,LOC108261365)


Basic Information

Item Value
gene id LOC103028117
gene name crhr1,LOC108413653,LOC107662410,LOC108261365
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1844980 ~ 2121494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665066.1
CGAGCTGCACGAGCTGCACGAGCGTCCCGCCGTTTAGGAACGTCTCTGCACTGAGGAGCCGAGGAACGCGTCCGTTTTGCCTACTGGACACAGTGTGATTTTGTGCGCCATGTATCGCGTCCTGCAGCCTCGGGTGTTTTACATCTGGATTACACTAATCTCTGGAGCCATGGCTGAGTTGACGTGCGAAGCTTTGCTCCTGATCCCCAACCTTACCGttcgtGCTATTGTGCTGTTGAATGAAACATCCAGCTCAACTAATTCTACAGGTTTGTTCTGTAACATATACACAGACGCCATCGGGACGTGCTGGCCCAAGAGCAGCGTGGGTGAAGTGATATCACGGCCCTGCCCCGACACCTTCCACGGGGTCCGCTACAACTCCACAAATAATGTCTACAGAGAATGTCTGGACAACGGGACGTGGGCAAGGAAGGCGGACTACTCGCAGTGTCTGGAAATACTTAATGAAGAGaaaaagagCAAGCTGCACTACCACATTGCAGTGATCATAAACTACCTGGGCCATTGCATCTCTCTGGGTGCCCTGCTGGTCGCCTTCATCCTTTTCATGAGGCTCAGGAGCATTCGGTGCCTGAGGAACATCATTCACTGGAATCTAATCACAGCCTTCATCCTCCGCAATGCTACCTGGTTCGTAGTGCAGCTAACCATGAATCCGGAGGTGCATGAGAGCAACGTGatCTGGTGCAGGCTGGTCACTGCAGCGTATAATTACTTCCATGTGACCAACTTTTTCTGGATGTTTGGTGAGGGCTGCTATCTGCACACGGCCATTGTGCTGACCTACTCCACTGATAAGCTGAGGAAGTGGATGTTCATTTGCATTGGCTGGTGTATCCCATTCCCCATTATTGTTGCATGGGCCATTGGCAAGCTTTACTACGACAATGAAAAGTGCTGGTTTGGGAAGCGAGCTGGCGTTTACACTGACTACATCTACCAAGGCCCCATGATACTTGTACTCCTGATCaactttattttccttttcaaCATTGTGAGAATTCTGATGACAAAGCTGAGGGCCTCCACCACTTCAGAAACCATTCAGTACAGAAAAGCAGTGAAGGCCACTCTGGTTCTGCTTCCACTGCTGGGCATCACttacatgctgttttttgtgaaccCTGGGGAAGATGAGATCTCCCAGattgtttttatctattttaactcTTTTCTGGAGTCCTTTCAGGGCTTTTTTGTCTCAGTGTTTTATTGCTTCCTGAACAGTGAAGTTCGCTCAGCAGTCCGGAAGCGATGGCACCGCTGGCAGGACAAGCACTCCATTCGAGCTCGGGTGGCCCGGGCCATGTCCATCCCCACCTCCCCCACTCGGGTCAGCTTCCACAGCATCAAGCAATCGTCTGCAGTCTGATCTCAACTGATCTCAACTGATCTCTACTGATCTTAACAGACTTCAGCTGATCTCAACTGGTCTCAACCACCAAAACCTGTCTGTATTTTACTGCAcacaccacccccacccccacccttaCCCTTACCTTCCCTCCAAACCAACCTTACAGCTAACTACAGCTAACCCTCCACTCCCTCAAGCAAACCCAGGGAACAGCTGCGGTCCAAACAGGGTACGAGGCCTTTCCACTGAATAACTGGTGCCTCGAAAAACTGCGGAGTTAAACACGGAGAGAGAGACGAGTAGAGGCAGGCGTGGAGCAGAGCCCCTCTCTGATCATGTGAAGGGAGGGGGGGCTGGACTCCATCATActgtgcagaaaaaaaggataaaggaataaaggaataaaggatGGAGATGCCtgactccaaaaaaaaaaaacactatgatGGAGACTATCAGGTAGAAATGATCAaagtttaatttcattttcttcttcttcttccccgGTCGGCCCTCCCCGTGTGTGCGCCATTTTCTCAGTGggaacctttttctttttcttttccccaCCGCTGGCCCGGCTTCGCTGGCAGACCCGTCGGATCAGGATCAGGATAATGAAGTGCGGGAGCTCCGAGGAGAAACGTGTCGAATTACTGCAGGTTTCAAATCCAAACATTTCTCTAACGTGGACGGTTGCTTTCTCAACAAACTGCTCACGTGGATAGCAACGGACGACTCCTGCTGATGCCCATCTGGGACGAATCTTTCGCTGTTATTGGAGTAGAGTCTCAATAtgggtatatatacacaatatatagatataaagatGATGTTATACGGATGGATGGCTGTCTTTCAAACGTAACTGCATAAAATATTGCAGCTTTTACTGCAACTACGAGCCTTTAGTTTGTGGACTGATTTCATGTCTGTAGACATGATGCACTGTGTCGTCACCTttggtacactgtaaaaaaacaacaaagaaaaatgtAGAAAAGGTAAAAGGTTAAAATTAGGCCAGTttagaacaataaaataaatactgattttatatatata

Function

symbol description
crhr1 Predicted to enable corticotrophin-releasing factor receptor activity; corticotropin-releasing hormone binding activity; and peptide receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and plasma membrane. Is expressed in griseum centrale and hindbrain. Human ortholog(s) of this gene implicated in asthma; chronic obstructive pulmonary disease; and obesity. Orthologous to several human genes including LINC02210-CRHR1 (LINC02210-CRHR1 readthrough).

NR:

description
PREDICTED: corticotropin-releasing factor receptor 1 isoform X1

GO: NA

KEGG:

id description
K04578 CRHR1; corticotropin releasing hormone receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665066.1 True 2446 mRNA 0.48 14 1844980 2121494

Neighbor

gene id symbol gene type direction distance location
LOC103044572 NA coding upstream 494060 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 768425 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 880541 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 886549 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 920694 911459 ~ 924286 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 427656 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 553254 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 647170 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 1043555 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 1098435 3219929 ~ 3227171 (+)
G296882 LOC106605384,LOC106604997 non-coding upstream 6298 1838019 ~ 1838682 (+)
G296873 NA non-coding upstream 96689 1748049 ~ 1748291 (+)
G296871 NA non-coding upstream 107218 1737203 ~ 1737762 (+)
G296866 NA non-coding upstream 119328 1725442 ~ 1725652 (+)
G296864 NA non-coding upstream 135963 1708658 ~ 1709017 (+)
G296892 NA non-coding downstream 3203 2124697 ~ 2129792 (+)
G296943 NA non-coding downstream 17219 2138713 ~ 2138919 (+)
G296944 NA non-coding downstream 29967 2151461 ~ 2152039 (+)
G296977 NA non-coding downstream 78672 2200166 ~ 2200402 (+)
G296984 NA non-coding downstream 98685 2220179 ~ 2221329 (+)
G296790 tcap,LOC108413611 other upstream 483045 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 554560 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 644192 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1010922 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1804089 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 920938 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 1428833 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2131522 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 2298503 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 2529149 4650643 ~ 4675621 (+)

Expression


Co-expression Network