LOC111191049 (spop,LOC107754841,LOC100710366)


Basic Information

Item Value
gene id LOC111191049
gene name spop,LOC107754841,LOC100710366
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 118768 ~ 257003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665072.1
CGTGCGTGCGCGTGCCCGACCGAGTTCGTCGTCACTGGCTTAACCCGGACGTGAAGTAGCGCGACAGAAAAATATCCGATACGGTCGAAGAAAAGCTACAAAAAAGTTTCCTGACTGAACCAACCGAGACTAACACACAAGAGCAGCACAGCTCCTCAGCTCTTCAGCTCCTCAGCTTTTCTAATACAATCCACACAGCAgtcagagaggagagaggagcagAGGACTGAGAGCACAGACACCTGGCTTAGCAATGGCTTCTCCTGCTTCACCAGATGTTTAATGGACTTTGATCTTGAACCAGGTTCCACCAGGCCGTGATCTATCCTTTCAATCAGAcgctaattaaagaaaaaaggagcGGACTGTCCCTCGCTTCCCTGCTCGCTGGCTGAGGGAGGCGCGGGCTGAGTGACAAAGGCGAGAGAGGAGAGCACAGAACGAGGGAGCCGGAAACAAAGGAAAGATGAAGAGgttctGCTGTTGCTGTTCTCCGTCTGCTCATCGCTGCATTCTCTCCATCTTCTCTGGACAGCTTTGAAGCTCAGCGTGTGCACAGATCCTAGCGGCGGCTGTGCTTTCCCGGCTTTCAGAGTTTGTGCCAGAGTCTGAGGAAGTGTTGCTCAGAGAGACggagtgtgcgagtgtgtgtgtgtgtgtgtgtgggagcatCGTCTGCTGGCAGCTGTAGTGCCCTCTCCACCACGCACGTTCAAAGCTGGCGATGTCCAGGGTCCCGAGTCCGCCCCCTCCAGCTGAAATGACCAGCGGCCCCGTGGCCGAAAGCTGGTGTTACACACAGATCAAAGTGGTGAAGTTTTCCTACATGTGGACCATCAACAACTTCAGCTTCTGTCGGGAGGAGATGGGCGAGGTCATTAAAAGCTCCACCTTCTCATCGGGAGCCAATGACAAGCTCAAATGGTGTTTGCGGGTGAATCCAAAAGGGCTGGACGAGGAGAGTAAAGACTACttatctctctatcttctcCTGGTGAGCTGTCCCAAGAGCGAAGTGCGTGCCAAGTTTAAGTTCTCCATCCTCAATGCCAAGGGGGAGGAGACCAAAGCCATGGAGAGTCAGCGAGCCTATCGCTTTGTTCAGGGCAAAGACTGGGGTTTCAAAAAGTTCATAAGGCGGGACTTCCTGCTGGACGAGGCCAATGGGCTACTGCCGGACGACAAACTGACACTCTTCTGTGAGGTGAGCGTGGTGCAGGACTCCGTGAACATCTCTGGGCAGAACACTATGAACATGGTGAAGGTTCCAGACTGCAGACTGGCTGATGAGCTGGGCGGACTGTGGGAACACTCTCGCTTCACCGACTGCTCGCTCTGCGTAGCTGGACAGGAGTTCCAAGCACACAAAGCCATCCTGGCAGCTCGCTCTCCAGTTTTCAGTGCCATGTTTGAGCATGAAATGGAGGAGAGCAAAAAGAATCGGGTGGAGATTAATGACGTGGAGCCAGAAGTGTTCAAGGAGATGATGTGCTTCATCTACACTGGCAAAGCACCCAACCTGGACAAGATGGCCGACGATTTACTCGCTGCTGCCGACAagTATGCTCTGGAGCGTCTGAAGGTGATGTGTGAGGATGCTCTGTGTacgagtctgtctgtggagaaCGCAGCAGAGATCCTGATCCTCGCTGACCTGCACAGTGCTGACCAGCTCAAGACACAGGCCGTCGACTTCATCAACTAcCATGCGTCAGACGTGATGGAGACATCGGGCTGGAAGTCCATGGTGGCGTCGCACCCTCATCTGGTGGCCGAGGCTTATCGCTCCCTCGCCTCGGCTCAGTGCCCCTTCCTGGGCCCTCCCCGCAAACGCCTCAAACAGTCATAGGGCCCGCCTCCCCGTAGCCTTTCCTTCCTAAACACCCCCACAGGACTGCCCGCATGGAGGCGCCATTCTTAAATTTAACCTTAACCTCTAAATACACCCCCTGGTAGGGATTCTAGCCAACCCTTGACCCTGAGGTAAGTGTCCTGTAGCGTCCCTTTTCCCTTTCCGACCTTATACCAGCCCTAAATGCCCCCAGAAATAAGAAGAGAAAGcgcgagagaaaaagagagagacagagacccTTTTGGCTCTCTTGGCTCTGGTTCTTCTTCTTGATTTCCAGCAGAGAGTTCGTCCATAGTGGCAAAGCGAAAGTAGCTGAGGGCGTTCCCTTCTCCCAAGCTATTCCCTCTTCGGAACTTCAAAACTTCGGAACTGTATCCCACCTGCCCTGCTAACCcaggatgagagagagatttcCTGGCTACAGTTTTGTAGGGATTGGACGAATGAATGGTTGGACAAATGGGTGAGAAAGGAGATAGATTGATGCCTTTTTGATGgaactgttatatatataaatatatatatatacagatacagGACACAAGCTGTATTGACCATGGTCTGCTCTGTGGACTGTGACCTTTACCCACTGTCCCCCTGTGATGGACTCTCCctcactgtgtgagtgtgtgtgtgtgtatgcgcatCTTCGTATCCATTTTGTCGGTGGCAGACGAAGGAATTTCTGTCGGACGTCTGACGAAAAAGGACTGAgcgacaaacaaacaaacaaacaaaaaaagacaacaacTAAAGTTATTGGTGGAGGACTGCAGAGCTTTTCCATAGGTAGCTTGTCTCTTATGATGACGTCATCAGCATTTTCTTCAGATGTTCCAGTAGGTCCTGTGTCTATTTTTTGATAATGTCCCTTCCCTTGTCGTAGTTTGCACAAGGCCAGGATGGCCGTGGAAAGAGAACGAGTCTTAAACAGAACTCTACTTGCTAGTCTTGGCTTTCTTGACAAGCGACGAAAGAAGAAGACCATCATCTTTCATGTACGTCTCCGTCTCCTTCAGAGAGGCTGTGATTGGCCAGATGGACGGAGGAGAGTTGAAAGCGGGGGAATGtggaaatgtgtaaatatatgagggttaatttcttttatttgatGTTAATTTGAGGTTTTCTCCTCCTTGTAGCACTTGTGTATTTAAACCCAGGCTTTCTGTATGAAAAcgaaaattacattaaaaaaaccaCCAGAAAACAAAAGATTCTACAAATAAACCTGGCTGTGCTTACGTTGTTTGTTCCTGGACTGTTGCAGTGTAGTGTTTACCCACATTTCATGccccttttttgttttgtctctttctgtttGCTCTCAGTCGTGGGTTAAAAGAGTTTTGGAGCGTTTTCCGAAGCAAAAGAGCCCTTTTCGCTTTGTGGAAATAAAAGTCAAGCTGACAGTTAGTATA
>XM_022665073.1
CGTGCGTGCGCGTGCCCGACCGAGTTCGTCGTCACTGGCTTAACCCGGACGTGAAGTAGCGCGACAGAAAAATATCCGATACGGTCGAAGAAAAGCTACAAAAAAGTTTCCTGACTGAACCAACCGAGACTAACACACAAGAGCAGCACAGCTCCTCAGCTCTTCAGCTCCTCAGCTTTTCTAATACAATCCACACAGCAgtcagagaggagagaggagcagAGGACTGAGAGCACAGACACCTGGCTTAGCAATGGCTTCTCCTGCTTCACCAGATGTTTAATGGACTTTGATCTTGAACCAGgttctGCTGTTGCTGTTCTCCGTCTGCTCATCGCTGCATTCTCTCCATCTTCTCTGGACAGCTTTGAAGCTCAGCGTGTGCACAGATCCTAGCGGCGGCTGTGCTTTCCCGGCTTTCAGAGTTTGTGCCAGAGTCTGAGGAAGTGTTGCTCAGAGAGACggagtgtgcgagtgtgtgtgtgtgtgtgtgtgggagcatCGTCTGCTGGCAGCTGTAGTGCCCTCTCCACCACGCACGTTCAAAGCTGGCGATGTCCAGGGTCCCGAGTCCGCCCCCTCCAGCTGAAATGACCAGCGGCCCCGTGGCCGAAAGCTGGTGTTACACACAGATCAAAGTGGTGAAGTTTTCCTACATGTGGACCATCAACAACTTCAGCTTCTGTCGGGAGGAGATGGGCGAGGTCATTAAAAGCTCCACCTTCTCATCGGGAGCCAATGACAAGCTCAAATGGTGTTTGCGGGTGAATCCAAAAGGGCTGGACGAGGAGAGTAAAGACTACttatctctctatcttctcCTGGTGAGCTGTCCCAAGAGCGAAGTGCGTGCCAAGTTTAAGTTCTCCATCCTCAATGCCAAGGGGGAGGAGACCAAAGCCATGGAGAGTCAGCGAGCCTATCGCTTTGTTCAGGGCAAAGACTGGGGTTTCAAAAAGTTCATAAGGCGGGACTTCCTGCTGGACGAGGCCAATGGGCTACTGCCGGACGACAAACTGACACTCTTCTGTGAGGTGAGCGTGGTGCAGGACTCCGTGAACATCTCTGGGCAGAACACTATGAACATGGTGAAGGTTCCAGACTGCAGACTGGCTGATGAGCTGGGCGGACTGTGGGAACACTCTCGCTTCACCGACTGCTCGCTCTGCGTAGCTGGACAGGAGTTCCAAGCACACAAAGCCATCCTGGCAGCTCGCTCTCCAGTTTTCAGTGCCATGTTTGAGCATGAAATGGAGGAGAGCAAAAAGAATCGGGTGGAGATTAATGACGTGGAGCCAGAAGTGTTCAAGGAGATGATGTGCTTCATCTACACTGGCAAAGCACCCAACCTGGACAAGATGGCCGACGATTTACTCGCTGCTGCCGACAagTATGCTCTGGAGCGTCTGAAGGTGATGTGTGAGGATGCTCTGTGTacgagtctgtctgtggagaaCGCAGCAGAGATCCTGATCCTCGCTGACCTGCACAGTGCTGACCAGCTCAAGACACAGGCCGTCGACTTCATCAACTAcCATGCGTCAGACGTGATGGAGACATCGGGCTGGAAGTCCATGGTGGCGTCGCACCCTCATCTGGTGGCCGAGGCTTATCGCTCCCTCGCCTCGGCTCAGTGCCCCTTCCTGGGCCCTCCCCGCAAACGCCTCAAACAGTCATAGGGCCCGCCTCCCCGTAGCCTTTCCTTCCTAAACACCCCCACAGGACTGCCCGCATGGAGGCGCCATTCTTAAATTTAACCTTAACCTCTAAATACACCCCCTGGTAGGGATTCTAGCCAACCCTTGACCCTGAGGTAAGTGTCCTGTAGCGTCCCTTTTCCCTTTCCGACCTTATACCAGCCCTAAATGCCCCCAGAAATAAGAAGAGAAAGcgcgagagaaaaagagagagacagagacccTTTTGGCTCTCTTGGCTCTGGTTCTTCTTCTTGATTTCCAGCAGAGAGTTCGTCCATAGTGGCAAAGCGAAAGTAGCTGAGGGCGTTCCCTTCTCCCAAGCTATTCCCTCTTCGGAACTTCAAAACTTCGGAACTGTATCCCACCTGCCCTGCTAACCcaggatgagagagagatttcCTGGCTACAGTTTTGTAGGGATTGGACGAATGAATGGTTGGACAAATGGGTGAGAAAGGAGATAGATTGATGCCTTTTTGATGgaactgttatatatataaatatatatatatacagatacagGACACAAGCTGTATTGACCATGGTCTGCTCTGTGGACTGTGACCTTTACCCACTGTCCCCCTGTGATGGACTCTCCctcactgtgtgagtgtgtgtgtgtgtatgcgcatCTTCGTATCCATTTTGTCGGTGGCAGACGAAGGAATTTCTGTCGGACGTCTGACGAAAAAGGACTGAgcgacaaacaaacaaacaaacaaaaaaagacaacaacTAAAGTTATTGGTGGAGGACTGCAGAGCTTTTCCATAGGTAGCTTGTCTCTTATGATGACGTCATCAGCATTTTCTTCAGATGTTCCAGTAGGTCCTGTGTCTATTTTTTGATAATGTCCCTTCCCTTGTCGTAGTTTGCACAAGGCCAGGATGGCCGTGGAAAGAGAACGAGTCTTAAACAGAACTCTACTTGCTAGTCTTGGCTTTCTTGACAAGCGACGAAAGAAGAAGACCATCATCTTTCATGTACGTCTCCGTCTCCTTCAGAGAGGCTGTGATTGGCCAGATGGACGGAGGAGAGTTGAAAGCGGGGGAATGtggaaatgtgtaaatatatgagggttaatttcttttatttgatGTTAATTTGAGGTTTTCTCCTCCTTGTAGCACTTGTGTATTTAAACCCAGGCTTTCTGTATGAAAAcgaaaattacattaaaaaaaccaCCAGAAAACAAAAGATTCTACAAATAAACCTGGCTGTGCTTACGTTGTTTGTTCCTGGACTGTTGCAGTGTAGTGTTTACCCACATTTCATGccccttttttgttttgtctctttctgtttGCTCTCAGTCGTGGGTTAAAAGAGTTTTGGAGCGTTTTCCGAAGCAAAAGAGCCCTTTTCGCTTTGTGGAAATAAAAGTCAAGCTGACAGTTAGTATA

Function

symbol description
spop Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of proteolysis. Predicted to be located in nuclear speck. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOP (speckle type BTB/POZ protein).

NR:

description
PREDICTED: speckle-type POZ protein

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0016607 nuclear speck cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665072.1 True 3276 mRNA 0.50 12 118768 257003
XM_022665073.1 False 3106 mRNA 0.50 11 118768 257003

Neighbor

gene id symbol gene type direction distance location
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 107005 283 ~ 11763 (+)
LOC103033788 slc4a1 coding downstream 607846 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 635092 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 654456 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 692301 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 704278 961281 ~ 964439 (+)
G296514 NA non-coding upstream 6068 112444 ~ 112700 (+)
G296536 NA non-coding downstream 709 257712 ~ 257925 (+)
G296539 NA non-coding downstream 6484 263487 ~ 264231 (+)
G296543 NA non-coding downstream 14532 271535 ~ 271788 (+)
G296545 NA non-coding downstream 17057 274060 ~ 274379 (+)
G296549 NA non-coding downstream 93205 350208 ~ 409395 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 77877 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 569375 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 934760 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 1030513 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 1102109 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2785429 3042432 ~ 3148603 (+)

Expression


Co-expression Network