glis2 (glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641)


Basic Information

Item Value
gene id glis2
gene name glis2,LOC107553665,LOC107661644,LOC107695710,LOC107601579,LOC107715641
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5415197 ~ 5451392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665081.1
TTGGCCAGTGGTTTGTTTCGGCTGCGGGTCGCCTGCGGTCACTCAAACCGAGGAATCTTCTGTATTCTGATATATTAGTGCCgacagccaatcacagcactCTAACCAGTACGTATCCAGCCAATCCCAACGCAGGAGGGGCGGGTCTTGCCGGAATAGGGGTGGAGGAAAAAATTTGCACGGGCTAGTCCTCCGCCCGAGGAGAGGGAGCACGGACTGGCGCGAGCCCGGTGCTGTCTGCGGTCAGACGGACGCTCGTGTCCGTTAGACGAGgagctgaaaaaacaaacaaacaagcaaagatcaaaggaacagaaaaaaagatcaaaCAACGGAACGCAGCTCGAGGACACATCAAACACATCATCCGGACACGGAGCTGGGAGAGCCCGCGCGCCCCCTCTCCTCAACAGAGCGACCACCCATAGAAAACCCAGCAGACCAGCTGCACCAGTAAGCGATGAGCCCAGTTCCCGGTTCCGAACATCAATCTTCctacattaatttattatttttggtttGACACTGCCTCCGTTTATCCGTGAGCGCGCGGAATAACCACCCTGCATAAGCTGTGTTATAGCCCGGTGTCGGTCCGGCCCGGTTCTGGAGGGTTTTGGACCAGCACTCGGAACgcttttcttatttttgagtttgactttttttttttgcttcattcAAAACGACAATGGTCCGCAACTGGACCGCACGAGACTGCGCTGCATCCCTGAGCTAACGCTGACAGAACCGGGTCTGTCTAGAACTGGGTCACACTGGGCCTACAGTAAACAGGACGCTTCAGCGTCAGAACTGGAATCAGTTGGAACGCGGAGAGAGGAAAGTTTCTGGAGGAGAGGTGGTTCGGTTCTGACCCATCTCAGCAGCAGTCACGGGATTTCTACAGAGATTGGACGCCCTTGGCTGCAGATATGCTCTCCTTGGATGAGCCACTGGACCTGAAGTTGACCAGGCATCCAAATGGGTGGGACAGAGGCTCCAGGACATCTCCAGTTCATGGTAAAAAGGCAGGGCAGCTACGGATGACTGACGATGGGACGGCCATCATTGTCCCGGCGTCTCCTGCGTCTCCCCACACGGGTGTGCCCTTGGCACCACAGGAGAAGCCTGAAGCCCCCACGCCTCCAGCCGTGGACCTCAGCATGTCGCCCACCTCACGCCACACAGCGTGCTCCCCCGACCTCGCCAGCGGAAACGGGTCCGCCCACGTCTATCCAGGAGACTCGTCTCACATCCGATACGTCGAGGGAGGACAGTCCTCACAAGGCTTCCAGTTCTTTGTACCAATCGGGGGAGGAAGCGGGCTCCACCTGCCCTCCTCCATGTTCAGCGGCCAATCAAAGGACAAGCGGGCGTCTCCTGATCTTTCGGCAGATGAGCAGCTGTACTGTCGCTGGAGAAAGtgcCACTTGCTTTTTGATTCTTTGCAAGACCTGGTAGACCACGTAAATGACTTCCATGTCAAGCCTGAAAAAGATTCTGGGTATTGTTGCCATTGGGAGGGCTGTGCACGGAAAGGGCGGGGCTTCAACGCAAgGTACAAAATGTTAATCCACATCCGCACACACACCAACGAGAAGCCCCACCGCTGCCCCACCTGCAACAAGAGCTTCTCCCGCCTGGAGAACCTAAAGATCCACAACCGTTCTCACACAGGAGAGAAGCCCTACATCTGCCCGTATGAAGGCTGCAACAAGCGCTACTCCAACTCCAGCGACCGCTTCAAGCACACGCGCACGCACTACGTGGACAAGCCCTACTACTGCAAGATGGTGGGCTGTCTAAAGCGGTACACGGACCCCAGCTCGCTGCGGAAGCACATAAAGGCTCACGGGCACTTCGTCTCGCAGGAGCAGATGGGCCCCGGGGCCATGGGGTCCCTGGTGAAGTCGGCTCAGATCGCGGGGCTGAAGAAGGAGTCGGAGCTGACCTACGTCAGCGGCGCACACATCATCATCCCGAGCACCGCCGCTCTGCTGGGGGGCCACAACCTGCAGGGCCTCGGGGGGTCCCTGCCCCTTTCGTCCCTCAGCCCGCGGCCCCTGGACTTGAGCACGCTCGGGAGCCCCGGCTCCCCTCCGGCCGGCCTGGCGGGGACCCCGGTCCTGGCCTTCAACGGCTCGGCGCTCGGCCTGGCCAAATCCACCCTGCTGTCCTCCGCCTTCTCCTCCTCCGCCCTGGGTTTACCCATAGTGCCCATGCTGGCATCCGGCAGAGGGCACAGCCAGGGCAGGAGCGGCGCAGAGGAGGGCGAGGATGGCCCGGGGGGCGTGCTCAACCTCTCCACGGGGGCGTCTCATGACCCCCTGTCCTGGGTGGTCATCCCTTCTGGCCCGGTTGTGTTGAAGCCAGCAGTGGTCAGCTGATTCCTCGTACCCTGTGTctcatacactgaaaaaaatgatgagtaaaattacttaaaaaaaagttttgcaactttctgcatttactttttttt

Function

symbol description
glis2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in central nervous system development; negative regulation of smoothened signaling pathway; and regulation of transcription, DNA-templated. Predicted to act upstream of or within hematopoietic stem cell homeostasis; kidney development; and positive regulation of protein localization to nucleus. Located in nucleoplasm. Implicated in nephronophthisis 7.

NR:

description
PREDICTED: zinc finger protein GLIS2

GO: NA

KEGG:

id description
K09233 GLIS2; zinc finger protein GLIS2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665081.1 True 2476 mRNA 0.58 7 5415197 5451392

Neighbor

gene id symbol gene type direction distance location
LOC103026631 NA coding upstream 58318 5348375 ~ 5356879 (+)
rab37 rab37,zgc:112183,LOC106601425,LOC106606976,LOC105012908,LOC107654586,LOC108278300,LOC107665712 coding upstream 70679 5278162 ~ 5344518 (+)
xylt2 xylt2,LOC107665700,LOC107743013,LOC107748866,LOC107654585 coding upstream 145095 5229044 ~ 5270102 (+)
recql5 recql5 coding upstream 246682 5117580 ~ 5168515 (+)
gadd45gip1 NA coding upstream 342014 5071404 ~ 5073183 (+)
dnaja3 LOC108431932 coding downstream 205374 5656766 ~ 5666429 (+)
LOC103033642 LOC103033642,LOC108431896,LOC107553625 coding downstream 267677 5719069 ~ 5719464 (+)
ccnf ccnf,LOC103461596,LOC107683020 coding downstream 292396 5743788 ~ 5761476 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding downstream 313607 5764999 ~ 5828725 (+)
LOC103034280 LOC108438908,LOC108276786 coding downstream 385113 5836505 ~ 5851771 (+)
G297656 NA non-coding upstream 12090 5361406 ~ 5403107 (+)
G297660 NA non-coding upstream 16366 5395724 ~ 5398831 (+)
G297634 NA non-coding upstream 212535 5169353 ~ 5202662 (+)
G297638 NA non-coding upstream 236459 5178355 ~ 5178738 (+)
LOC111191036 NA non-coding upstream 298387 5112380 ~ 5116810 (+)
G297657 NA non-coding downstream 7157 5458549 ~ 5461512 (+)
G297679 pam16,LOC107695711,LOC106601835 non-coding downstream 11313 5462705 ~ 5466991 (+)
LOC111191054 NA non-coding downstream 16531 5467923 ~ 5481340 (+)
G297681 NA non-coding downstream 21407 5472799 ~ 5473507 (+)
G297901 NA non-coding downstream 147464 5598856 ~ 5599076 (+)
LOC111191039 NA other upstream 739576 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 981126 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1115750 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 1774583 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 2266594 3042432 ~ 3148603 (+)
LOC103033323 NA other downstream 251120 5702512 ~ 5711874 (+)

Expression


Co-expression Network