LOC111191060 (ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365)


Basic Information

Item Value
gene id LOC111191060
gene name ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2549150 ~ 2688790 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665111.1
gagagagagagagagagagaggctaagCCAGGACTCTAATAGCAGGTTTTCGTTTTCATCCTCGCTGTTGTTGTATTCAGGTctgaagagagaggagaaaagtgAGAGATTACAACACATCCGGgggaaagtgtgtgagagagagagagagagagagagagagagagagagagagagagagagaggagagagagagaaaggcagagcaGAGGCTGTAATTAGCGCTGAAGACACTCTGCGCTCTCCTGAGCTCCTCGGTGCGCTTCTCTCTGGGACTGGGCGCATGGCTCCGTTGGAACTGCTGCGGTACGCACACTGGTTCAGCTAGAACAGAGCGAGAGGAGGCGCGCGCGGGTCCAGCGGTGACTCCTCGAGGCTTTCTTTCATTTATCCTGGAGTTTttcaccagttttttttttcaagttttaacTTTCCTGACCCTGTGCTTCGGATGCGGCGTGCGCGCGCTGCAGTGGGACAGGCGcgcttgtgtgttttttaggaAGTTTTAGACTGATTACAGCGCACGTGGTCTTGATTAAAAACAACCCGTCACTGCAACCGCTAAACCCAAAAATAAAGAATCAAAACAAGCCCTTTGCTGCGGTTTTCCGGCGCACGCGGCGATGCTGCGGGTTGTTTTCGCGTGCGGGACTGCGCTAATCGCGCTCGCCGCGCTCTTGGTTGAGGGCGCGCGTGGCGGCGGCGGTGGTATTGGAGGAGGAGGCGGTGGCTACAGCCACGCGTACGGCGGCGCGAGCGTGTTCGCGGCACAGTCGTCCCCCCCGGACCCCTGCTACGATGAGAACGGGCAGCCGCGCCGCTGCATCCCGGACTTTGTGAACGCGGCGTTCGGCAAGGAGGTGCGCGCCTCCAGCACCTGCGGCGCTCAAACAGCCGCGCGCTACTGCGTGGTGACCGAGCGCGGAGAGGAGCGCTCGCGCGAGTGCCACACGTGCGACGCGGCGGACCCCAAGAAGGCGCACCCCGCCGCCTACCTGACGGACCTGAACAACCCGCACAACCTCACGTGCTGGCAGTCGGAGAGCTACGTGCAGCACCCGCAGAACGTGACGCTCACGCTTTCGCTGGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGCAGTTCTGCTCGCCGCGGCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGAAAAACCTGGGTCCCCTTCCAGTTCTACTCCACGCAGTGCAAGAAGATGTTCAACCGGCCGAGCCGCGCCGCCATCACCAAGCAGAACGAGCAGGAGGCGGTGTGCACGGACTCCCACACCGACATGCGGCCGCTGGCCGGCGGCCTCATCGCCTTTAGCACCCTGGACGGGCGCCCGTCCGCGCACGACTTCGACAACTCGcctgtgctgcaggactggGTGACGGCCACGGACGTGCGCGTGACGTTCAGCCGCCTGCACACGTTCGGCGACGAGAATGAGGACGACTCGGAGCTGGCGCGCGACTCCTACTTCTACGCGGTGTCCGACCTGCAGGTGGGCGGCCGCTGCAAGTGCAACGGGCACGCGTCCAAGTGCGTGAAGGACCGCGACGGCGGCGGCCTCGTGTGCGAGTGCAAGCACAACACGGCGGGCGCAGAGTGCGACCGCTGCAAGCCTTTCCACTACGACCGGCCGTGGCAGCGCGCCACCGCGAGGGAGGCCAACGAGTGCGTGGcctGTCACTGTAACCTGCACGCCCGCCGCTGCCGCTTCAACATGGAGCTGTATAAACTGTCGGGGCGCCGAAGTGGAGGCGTGTGCCTCAACTGCAGACACAACACTGCCGGCCGCCACTGCCACTACTGCAAAGAGGGCTACTATAGAGACATGACCAAGGCCATCTCCCACAGACGAGCCTGCAAAGcATGCGACTGCCACCCAGTTGGTGCTGCTGGTAAGACGTGTAACCAGACCACAGGGCAGTGTCCGTGTAAAGACGGTGTGACGGGCATCACCTGCAACCGCTGCGCTAAAGGCTACCAGCAGAGCCGCTCGCCCATCGCCCCCTGCATCAAGATTCCGGTGGCCTCCCCCACAGCTACTTACACCAGTGCAGAGGAGCCAACAGACTGCGATTCCCACTGCAAAGCCTCTAAGGGCAAAATGAaggtcaccatgaagaagtactGCAAGAAGGACTTTGCTGTCCAGGTTCACGTGCTGAAAGGAGACAAGGCGGGCGAGTGGTGGAAATTCACCATCAACATCATCTCAGTCTACAAACAGGGTGAGCACCGCATCCGCCGGGGTGATCAGCTGCTCTGGGTTCGCGCCAAGGACGTGGCCTGCAAGTGCCCCAAGATCAAGCCCGGGAAGAAGTACCTGCTGCTGGGCTCGGACGACGACGACTCGCGCGGCCAGAGCGGCGTGGTGGCCGACAAGGGCAGCCTGCTGATCCCCTGGAAGGACCTGTGGGCCCGGCGGCTCCGCAAGTTCCAGCAGCGCGACAAGAGGGGCAAGTGCTAGAGGAGCCCGGCAGCAGAACGTAGAAGAAGAAGGAATAACGGAAGAAAacaaaggagagaaagagagaaagaga

Function

symbol description
ntn1 Predicted to be involved in several processes, including Cdc42 protein signal transduction; generation of neurons; and substrate-dependent cell migration, cell extension. Predicted to act upstream of or within several processes, including animal organ morphogenesis; generation of neurons; and nuclear migration. Located in extracellular region. Implicated in congenital mirror movement disorder.

NR:

description
PREDICTED: netrin-1

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0030516 regulation of axon extension biological_process
GO:0071678 olfactory bulb axon guidance biological_process
GO:0021960 anterior commissure morphogenesis biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K06843 NTN1; netrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665111.1 True 2562 mRNA 0.61 6 2549150 2688790

Neighbor

gene id symbol gene type direction distance location
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 427656 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 1198230 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 1472595 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 1584711 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 1590719 949304 ~ 958431 (+)
LOC111191042 LOC108432083 coding downstream 79874 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 476259 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 531139 3219929 ~ 3227171 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 539668 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 644089 3332879 ~ 3342234 (+)
G297005 NA non-coding upstream 44296 2504459 ~ 2504854 (+)
G297003 NA non-coding upstream 53349 2495089 ~ 2495801 (+)
G296999 NA non-coding upstream 61506 2486742 ~ 2487644 (+)
G296989 NA non-coding upstream 276947 2271937 ~ 2272203 (+)
G296986 NA non-coding upstream 320418 2228293 ~ 2228732 (+)
G297013 NA non-coding downstream 3232 2692022 ~ 2692623 (+)
G297040 NA non-coding downstream 9920 2698710 ~ 2698926 (+)
G297042 NA non-coding downstream 26486 2715276 ~ 2777154 (+)
G297043 NA non-coding downstream 31117 2719907 ~ 2723548 (+)
G297056 NA non-coding downstream 132333 2821123 ~ 2821452 (+)
G296790 tcap,LOC108413611 other upstream 1187215 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1258730 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1348362 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1715092 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2508259 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 353642 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 861537 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1564226 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1731207 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1961853 4650643 ~ 4675621 (+)

Expression


Co-expression Network