rnps1 (LOC108411755,LOC103909923,LOC107553655)


Basic Information

Item Value
gene id rnps1
gene name LOC108411755,LOC103909923,LOC107553655
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 5940247 ~ 5951494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665116.1
CAGAGCGCCGGAAATACACCCCCTCTGGAGCGGATAGGCGCAGGCGCAGTAGCAGCACGGAGAGAGTGCGCTTCAGTACAGGAACATGGCCCCATCACCTACCAAACGCAGGGAACGTTCAGAAGATAAAGGCAGAGAAAGGGGCAAAGAAAAGGCTGCAGCGAAGGAAGGTGctgagaaggagaaggagaaggagagggGCAGGGACAAGAACCGCAAACGCCGCAGTAACTCTactgggagcagcagcagcagGTCTAgatccagctccagctccagcagcagctctggATCCAGCTCTGGTTCATCCAGTGGTTCCAGCTCCTCCTCTGGCTCTAGCCGCTCTGGATCCTCCAGCTCTTCTCGCTCCTCCAGTTCCTCTGGTTCCTCGGGGTCGCCGAGCCCCAGTCGCCGCCGACACGACAACCGCAGACGCTCACGGTCAAAGTCCAAATCGCAGAAAAGGGGAGAGGAGAAGGAAAGGAAGAGGAGAAGTCCGAGTCCGAAACCTACCAAACTTTGCCTGGGAAGACTGACCAGGAATGTCACGAAGGATCACATCCAAGAGATTTTCTCCACCTACGGGAAGATCAAAATTATTGATATGCCACAAGACCGGTTACATCCAAACTTGTCCAGGGGCCACGCCTATATCGAGTTTGAGACCCCAGAGGAGGCCCAGAAGGCTCTGAAGCACATGGATGGAGGTCAGATCGATGGTCAGGAGATAACAGCTACAGCTGTCCTGACCCCCAGGATACGCCCTGCTCCCCGCAGGATGACTCCTCCACGCAGGATGCCGCCTCCACCCCCGATGTGGCGTCGAACTCCACCACGCATGAGGAGAAGgTCTCGTTCGCCTCGTCGTCGCTCTCCAGTGAGAAGACGCTCTCGCTCCAGATCTCCGGGCCGCCGACGCCATCGCTCACGCTCCAGCTCCAACTCCTCACGATAGAGAGGCTCTTCTCACACCTGACGAAGCTTTTAGTGCAGCGATGCACCTTCACTTCACCACCAACAGAGCAGAAACTGCAGGGCCTGATCTGAACGCGGACAGAAACCGTTAACGTTGCATCAGAAACGATTAGTCATTCgtaaaaatccatatttttcCCCCTTCAGGATTTATTTGTACCTGAAATCCCCTGTCATCACATTATCATACCCACTGAAGTGAAAGAGCgtagttttttcttttcctctgtgAGCCTACTGTGCGTACTGAGTGGAAGTTTcgtattttatcatatttttacatAACTTTGAGGTTAAACCTAACTCTGATGAGActtgatttttttctgtattttggatcatcaattAAAACGTTTCTTTACAAA
>XM_022665117.1
GCAGCGCTCAGAGCGCCGGAAATACACCCCCTCTGGAGCGGATAGGCGCAGGCGCAGTAGCAGCACGGAGAGAGTGCGCTTCAGTACAGGAACATGGCCCCATCACCTACCAAACGCAGGGAACGTTCAGAAGATAAAGGCAGAGAAAGGGGCAAAGAAAAGGCTGCAGCGAAGGAAGGTGctgagaaggagaaggagaaggagagggGCAGGGACAAGAACCGCAAACGCCGCAGTAACTCTactgggagcagcagcagcagatccagctccagctccagcagcagctctggATCCAGCTCTGGTTCATCCAGTGGTTCCAGCTCCTCCTCTGGCTCTAGCCGCTCTGGATCCTCCAGCTCTTCTCGCTCCTCCAGTTCCTCTGGTTCCTCGGGGTCGCCGAGCCCCAGTCGCCGCCGACACGACAACCGCAGACGCTCACGGTCAAAGTCCAAATCGCAGAAAAGGGGAGAGGAGAAGGAAAGGAAGAGGAGAAGTCCGAGTCCGAAACCTACCAAACTTTGCCTGGGAAGACTGACCAGGAATGTCACGAAGGATCACATCCAAGAGATTTTCTCCACCTACGGGAAGATCAAAATTATTGATATGCCACAAGACCGGTTACATCCAAACTTGTCCAGGGGCCACGCCTATATCGAGTTTGAGACCCCAGAGGAGGCCCAGAAGGCTCTGAAGCACATGGATGGAGGTCAGATCGATGGTCAGGAGATAACAGCTACAGCTGTCCTGACCCCCAGGATACGCCCTGCTCCCCGCAGGATGACTCCTCCACGCAGGATGCCGCCTCCACCCCCGATGTGGCGTCGAACTCCACCACGCATGAGGAGAAGgTCTCGTTCGCCTCGTCGTCGCTCTCCAGTGAGAAGACGCTCTCGCTCCAGATCTCCGGGCCGCCGACGCCATCGCTCACGCTCCAGCTCCAACTCCTCACGATAGAGAGGCTCTTCTCACACCTGACGAAGCTTTTAGTGCAGCGATGCACCTTCACTTCACCACCAACAGAGCAGAAACTGCAGGGCCTGATCTGAACGCGGACAGAAACCGTTAACGTTGCATCAGAAACGATTAGTCATTCgtaaaaatccatatttttcCCCCTTCAGGATTTATTTGTACCTGAAATCCCCTGTCATCACATTATCATACCCACTGAAGTGAAAGAGCgtagttttttcttttcctctgtgAGCCTACTGTGCGTACTGAGTGGAAGTTTcgtattttatcatatttttacatAACTTTGAGGTTAAACCTAACTCTGATGAGActtgatttttttctgtattttggatcatcaattAAAACGTTTCTTTACAAA

Function

NR:

description
PREDICTED: RNA-binding protein with serine-rich domain 1 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665116.1 False 1340 mRNA 0.53 7 5940255 5951494
XM_022665117.1 True 1342 mRNA 0.53 7 5940247 5951494

Neighbor

gene id symbol gene type direction distance location
LOC111191063 NA coding upstream 9901 5917022 ~ 5930346 (+)
LOC103034605 NA coding upstream 27858 5894766 ~ 5912389 (+)
LOC111191062 LOC108438908,LOC108276786 coding upstream 55884 5867114 ~ 5884363 (+)
LOC103034280 LOC108438908,LOC108276786 coding upstream 88476 5836505 ~ 5851771 (+)
abca3 abca3,abca3b,LOC107742093,LOC102307646,LOC102775623 coding upstream 111522 5764999 ~ 5828725 (+)
LOC111191058 NA coding downstream 2152 5953646 ~ 5964403 (+)
G298007 NA non-coding upstream 49481 5865537 ~ 5890766 (+)
G298004 NA non-coding upstream 53132 5882321 ~ 5887115 (+)
G298009 NA non-coding upstream 65656 5873481 ~ 5874591 (+)
G297933 NA non-coding upstream 106107 5767522 ~ 5834140 (+)
G297936 NA non-coding upstream 111969 5827111 ~ 5828278 (+)
LOC103033323 NA other upstream 228373 5702512 ~ 5711874 (+)
LOC111191039 NA other upstream 1264626 4650643 ~ 4675621 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 1506176 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 1640800 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 2299633 3550327 ~ 3640614 (+)

Expression


Co-expression Network