LOC111191061


Basic Information

Item Value
gene id LOC111191061
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2674748 ~ 2678277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649344.1
ttggtcaagGAGGCAAAGACAagatctcaaaagtaggttttgcatattatgcaaattaaaaaaaaattaagtgggtGGAGCATAAATAAGAATGACCCAGGTGGCTGACTAGCATGACCAAGAAGGATAAATATGTTCAATTAAGCAagacaaaaatgattaaataagttcagcagagctttaatttagaataatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649344.1 True 196 ncRNA 0.32 2 2674748 2678277

Neighbor

gene id symbol gene type direction distance location
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 553254 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 1323828 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 1598193 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 1710309 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 1716317 949304 ~ 958431 (+)
LOC111191042 LOC108432083 coding downstream 90387 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 486772 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 541652 3219929 ~ 3227171 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 550181 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 654602 3332879 ~ 3342234 (+)
G297022 NA non-coding upstream 802 2671700 ~ 2673946 (+)
G297021 NA non-coding upstream 4886 2668672 ~ 2669862 (+)
G297018 NA non-coding upstream 15527 2654772 ~ 2659221 (+)
G297016 NA non-coding upstream 22789 2649415 ~ 2651959 (+)
G297005 NA non-coding upstream 169894 2504459 ~ 2504854 (+)
G297013 NA non-coding downstream 13745 2692022 ~ 2692623 (+)
G297040 NA non-coding downstream 20433 2698710 ~ 2698926 (+)
G297042 NA non-coding downstream 36999 2715276 ~ 2777154 (+)
G297043 NA non-coding downstream 41630 2719907 ~ 2723548 (+)
G297056 NA non-coding downstream 142846 2821123 ~ 2821452 (+)
G296790 tcap,LOC108413611 other upstream 1312813 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1384328 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1473960 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1840690 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2633857 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 364155 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 872050 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1574739 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1741720 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1972366 4650643 ~ 4675621 (+)

Expression


Co-expression Network