Gene
RNA
| Item | Value |
|---|---|
| gene id | G81985 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 7190949 ~ 7192986 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU93302 | True | 1526 | lncRNA | 0.35 | 4 | 7190949 | 7192986 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_07154745_07159568 | PECR | coding | upstream | 31341 | 7154745 ~ 7159608 (+) |
| CI01000013_07148102_07150807 | coding | upstream | 39994 | 7148052 ~ 7150955 (+) | |
| CI01000013_07131096_07141914 | NA | coding | upstream | 48907 | 7130952 ~ 7142042 (+) |
| CI01000013_07119401_07124434 | TSHZ3A | coding | upstream | 66322 | 7119401 ~ 7124627 (+) |
| CI01000013_07093361_07101998 | MTSS1LA | coding | upstream | 88581 | 7093361 ~ 7102368 (+) |
| CI01000013_07277014_07279249 | NA | coding | downstream | 83624 | 7276610 ~ 7279319 (+) |
| CI01000013_07286519_07288160 | NA | coding | downstream | 93456 | 7286442 ~ 7288547 (+) |
| CI01000013_07375912_07390782 | MLYCD | coding | downstream | 180832 | 7373818 ~ 7391003 (+) |
| CI01000013_07765924_07780475 | NA | coding | downstream | 571699 | 7764685 ~ 7780716 (+) |
| CI01000013_07791141_07802608 | NA | coding | downstream | 597718 | 7790704 ~ 7802710 (+) |
| G81939 | NA | non-coding | upstream | 105448 | 6987893 ~ 7085501 (+) |
| G81883 | NA | non-coding | upstream | 285605 | 6905056 ~ 6905344 (+) |
| G81920 | NA | non-coding | upstream | 303128 | 6887493 ~ 6887821 (+) |
| G81918 | NA | non-coding | upstream | 308725 | 6881956 ~ 6882224 (+) |
| G81904 | NA | non-coding | upstream | 327528 | 6863202 ~ 6863421 (+) |
| G82010 | NA | non-coding | downstream | 74108 | 7267094 ~ 7267316 (+) |
| G82013 | NA | non-coding | downstream | 76631 | 7269617 ~ 7269836 (+) |
| G82017 | NA | non-coding | downstream | 82691 | 7275677 ~ 7275887 (+) |
| G82045 | NA | non-coding | downstream | 146743 | 7339729 ~ 7340751 (+) |
| G82050 | NA | non-coding | downstream | 155733 | 7348719 ~ 7352640 (+) |
| CI01000013_06076169_06080164 | NA | other | upstream | 1108582 | 6075400 ~ 6081684 (+) |
| CI01000013_06050285_06059640 | NA | other | upstream | 1131453 | 6049864 ~ 6060269 (+) |
| G80845 | NA | other | upstream | 2354717 | 4835078 ~ 4836232 (+) |
| CI01000013_04051081_04064651 | NA | other | upstream | 3125120 | 4050837 ~ 4065829 (+) |
| G80062 | NA | other | upstream | 3606165 | 3584008 ~ 3584784 (+) |
| G81994 | NA | other | downstream | 142959 | 7335945 ~ 7338239 (+) |
| G82168 | NA | other | downstream | 835352 | 8028338 ~ 8041343 (+) |
| G82581 | NA | other | downstream | 2136343 | 9329329 ~ 9334948 (+) |
| G84005 | NA | other | downstream | 2408625 | 9601611 ~ 9602235 (+) |
| G84194 | NA | other | downstream | 2837622 | 10030608 ~ 10036953 (+) |
