G83285


Basic Information

Item Value
gene id G83285
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7438226 ~ 7438757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU94735
TGACAACATGACAGAGCAAAACACTGCTAGCCATTGTTTGTTTACGCTCACCTTCTGTCAGTCGATAGTCCCGCCTTCTTGATGACAGCACGCACGTCTTTAAGACTGCAAGTGATGAATGGTCGGGTAGCTAGATATTTTACTTCATAACTTGTTAAATATGGATATTTTTTACACAAACGCATCTCTTCACTTCAGAAGGTCTTTATTAACCCCCCGGAGCCGTGTGGAGTATGTTTATGATGGATGGATGTGGATGGAGACACTTTCTTCAGCTCATACTCGTTGATCCCGCTCACTGCCATTATAAAGCTCGGATGCGTCAGGATATTTATTAATATATCTCTGATTGTGTTCATCAGAAAGAAGAAAGTCATGTATACCTAGGATGGCTTGAGGATGAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTTAACTAATCCTTTAAAGTTGCAGTATGTGATATTGACAGCTAGCGGTTGAAATGGGTACTGTAATACAAATTCAAAATATTGGAGAGTTGTTTCCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU94735 True 532 lncRNA 0.40 1 7438226 7438757

Neighbor

gene id symbol gene type direction distance location
CI01000013_07339918_07367774 NA coding downstream 70452 7339709 ~ 7367774 (-)
CI01000013_07293239_07332640 PQLC1 coding downstream 105566 7292985 ~ 7332660 (-)
CI01000013_07235040_07261096 KCNG4, KCNG4A coding downstream 176876 7234548 ~ 7261350 (-)
CI01000013_07210430_07219124 NA coding downstream 219102 7210236 ~ 7219124 (-)
CI01000013_07192237_07194777 WFDC1 coding downstream 243449 7191014 ~ 7194777 (-)
CI01000013_07455026_07456463 NA coding upstream 15484 7454241 ~ 7456506 (-)
CI01000013_07463570_07636742 CDH13 coding upstream 24813 7463570 ~ 7636742 (-)
CI01000013_07641497_07662151 NA coding upstream 202160 7640917 ~ 7663747 (-)
CI01000013_07703864_07718313 NA coding upstream 265004 7703761 ~ 7719073 (-)
CI01000013_07804879_07805627 NA coding upstream 366109 7804866 ~ 7805665 (-)
G83269 NA non-coding downstream 16575 7421296 ~ 7421651 (-)
G83253 NA non-coding downstream 44152 7393851 ~ 7394074 (-)
G83252 NA non-coding downstream 44399 7393535 ~ 7393827 (-)
G83251 NA non-coding downstream 44983 7392966 ~ 7393243 (-)
G83199 NA non-coding downstream 99952 7335981 ~ 7338274 (-)
G83280 NA non-coding upstream 4142 7442899 ~ 7443299 (-)
G83301 NA non-coding upstream 32997 7471754 ~ 7519547 (-)
G83318 NA non-coding upstream 83025 7521782 ~ 7526798 (-)
G83212 NA non-coding upstream 334874 7773631 ~ 7798954 (-)
G83393 NA non-coding upstream 380397 7819154 ~ 7819365 (-)
CI01000013_05883498_05884071 CHTF8 other downstream 1553854 5882049 ~ 5884071 (-)
G81547 NA other downstream 1694188 5739526 ~ 5744038 (-)
G81032 NA other downstream 2687665 4748809 ~ 4750561 (-)
CI01000013_04561253_04567647 MAP2K1 other downstream 2879323 4560340 ~ 4567647 (-)
CI01000013_09309438_09335834 MICAL3A other upstream 1868279 9307036 ~ 9336077 (-)
G85170 NA other upstream 3041104 10479861 ~ 10480700 (-)
CI01000013_10564288_10569141 NA other upstream 3124702 10563459 ~ 10569290 (-)
G85188 NA other upstream 3153447 10592204 ~ 10595337 (-)
G85401 NA other upstream 3596275 11035032 ~ 11035466 (-)

Expression


Co-expression Network