G82079


Basic Information

Item Value
gene id G82079
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7661091 ~ 7805546 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93417
TAAAAAAGCCCCAGGGGGCAATTTTTCCCCCTTAATAAGAAAAGTTAATTTCTAACACTGATCTCTTCTGAATGAAATATGCGGCTGTCCTTACAGAGACAATGACAGGACATGATGGGTAATTTCCAGTCTGAGCTGGAGTCTGTCAATATGATGGCAGTAAAGACACACTGACTGACACATACATCCAATTCTGTAAGAAGAGAATCATGGGTGTCCAGACATATGATGTCTCCAGCATTTAAAATGACAAGATTGAAAACTTCAGGCCATTTAACAAAACACACACATATACAAAATCAACACAGAGAGAAATGCTTACCCTGAGTGTCTGTGGAGATCTGGACGGTGCTCCCATAATGGTCACTTGTGCCATGTCATCGACATGAACGTTGACACCATGGACAAACATGACGTCTCCGCTGTCAATCACGTCTCTTCTAGGAACCAGATTCAGGTTCTCGTCTATTAAGAAGTTTGGGTTCGATACTTCAAACTCCACACCCTCATTTCCAGCGCAGTCATCAAACACCACTTGCAGCAGAGGAACGTCTTTGAGGAACCCTCCACTGTACTCCACCTGGTACTCCTTCTCCTGAAATCCCGGTACACATTCAGCCTTCTCTTCTTTTTCCTGCGCTCCAGTGCACACAACCTGGGAAACGAGGAATGCGATGAAAATGCGGGTTCCGAACTCCATGGTCTCAGATAAGTGGGAATAATGTTCAAAACGAGATGCTCGGACCAGCGCTGTTCATAATTCCAGAGTCGCGAGAGTAAAGCCCCTCTGCCTCGAGCTGCCAACTTCCCAAATAGAACTGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93417 True 825 lncRNA 0.45 3 7661091 7805546

Neighbor

gene id symbol gene type direction distance location
CI01000013_07375912_07390782 MLYCD coding upstream 270088 7373818 ~ 7391003 (+)
CI01000013_07286519_07288160 NA coding upstream 372544 7286442 ~ 7288547 (+)
CI01000013_07277014_07279249 NA coding upstream 381772 7276610 ~ 7279319 (+)
CI01000013_07154745_07159568 PECR coding upstream 501483 7154745 ~ 7159608 (+)
CI01000013_07148102_07150807 PDF coding upstream 510136 7148052 ~ 7150955 (+)
CI01000013_07929832_07935997 GAN coding downstream 124286 7929832 ~ 7935997 (+)
CI01000013_07970614_07989626 CMIP coding downstream 165068 7970614 ~ 7989756 (+)
CI01000013_08013515_08013676 NA coding downstream 207969 8013515 ~ 8014766 (+)
CI01000013_08066408_08071727 KLHL36 coding downstream 259663 8065209 ~ 8071972 (+)
CI01000013_08095012_08097899 CS012 coding downstream 289466 8095012 ~ 8098533 (+)
G82076 NA non-coding upstream 196183 7463581 ~ 7464908 (+)
G82073 NA non-coding upstream 212527 7448288 ~ 7448564 (+)
G82069 NA non-coding upstream 219087 7441787 ~ 7442004 (+)
G82065 NA non-coding upstream 233072 7427817 ~ 7428019 (+)
G82061 NA non-coding upstream 251853 7408969 ~ 7409238 (+)
G82286 NA non-coding downstream 16154 7821700 ~ 7822011 (+)
G82337 NA non-coding downstream 146305 7951851 ~ 7952268 (+)
G82338 NA non-coding downstream 146895 7952441 ~ 7952655 (+)
G82339 NA non-coding downstream 147222 7952768 ~ 7952996 (+)
G82146 NA non-coding downstream 205715 8011261 ~ 8059825 (+)
G81994 NA other upstream 322852 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 1578724 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1601595 6049864 ~ 6060269 (+)
G80845 NA other upstream 2824859 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3595262 4050837 ~ 4065829 (+)
G82168 NA other downstream 222792 8028338 ~ 8041343 (+)
G82581 NA other downstream 1523783 9329329 ~ 9334948 (+)
G84005 NA other downstream 1796065 9601611 ~ 9602235 (+)
G84194 NA other downstream 2225062 10030608 ~ 10036953 (+)
G84215 NA other downstream 2270908 10076454 ~ 10079336 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G166712 NA non-coding NC_048566.1 CM023220.2 60205896 ~ 60221876 (-)