G82157


Basic Information

Item Value
gene id G82157
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8015253 ~ 8016366 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93508
TCCACATATTTATTTATTTGGTGAGTAGCTGTGTAATAACTTGGATAATGTACAGTTAAACGTACCACATACATTTCAGTAAGTCTGACTGTACATTATCCCTTAATGCCAAATCACACTGAACCAGCAGACAGTGACCAACGGAAACAGACACTTCTACAGGATTTGTCGGTTGGCATCTTTTTCCATTAGTTGGCACTTGTTTTCACACATTTAATGTTCAATCCCCATTTGTCAGGTTGTGGAATGTCTGAGAAGTGACATACTGTAGCATGGTCTAGTGATTGTCCGCGTTGGTCGGTGTCTGTCAGCACAGTGTGAAATGGGCTTTACATATCCATCCAAGCAAACATGATAAAACCTCCTCTACCAATATGCATATTAAAAAAAGAAACCGAATAAATAACATGTCTTGTTATTTCAATTTTTAAGACAATAAAGGAAGAGTTTAATACAGCTAAAAATGAAATGTTACAAACCGATTAAGAAAGTACATGAACAGTATCACATTTACCACACACAAAAAAAAAAAAAAATCTTCATGCAGTTTTCATGCCCACAATATAAAGAGTTTTACAGCTTCTGGGTTCTGGTCAAACATCTGGCTGACCATTTACACTTTCCACAAAGAATTCACAGATGAGTATTGCTCAAATTCTCTTTCCGATTGATTCCAGTGTGACATTAAAAGTGAGATGGCTGCAACTTCCTGTCTTTGCAGCCTATTTAGGGAACCAGTAGTAATAGAGCAGCAGAATGGAGAGGAAAAGACCCTTAAGAACATTAGAACCAGGCTGGGAGGGAACTAGACTTCTTGTTTTCCTCAAGAGTAGAACTTGCTGTTGTTTATTTTTTGCTGTGGTTTATTTAACCTTTTTTTCTGAGTAAGTGAACTCCTGCGAGATGTCCTCACGGCGCTGAGGGGTCGCGGCACGCTGCAGGTTGGAGTGAGTATCGTAGAGGCAGAACTCATTGCTTAACTCTGCCTGCTTCTTTTGCAACTGTTTCGAGGAGGAGTAGAGTTCTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU93508 True 1029 lncRNA 0.39 2 8015253 8016366

Neighbor

gene id symbol gene type direction distance location
CI01000013_08013515_08013676 NA coding upstream 487 8013515 ~ 8014766 (+)
CI01000013_07970614_07989626 CMIP coding upstream 25497 7970614 ~ 7989756 (+)
CI01000013_07929832_07935997 GAN coding upstream 79256 7929832 ~ 7935997 (+)
CI01000013_07791141_07802608 NA coding upstream 212543 7790704 ~ 7802710 (+)
CI01000013_07765924_07780475 NA coding upstream 234537 7764685 ~ 7780716 (+)
CI01000013_08066408_08071727 KLHL36 coding downstream 48843 8065209 ~ 8071972 (+)
CI01000013_08095012_08097899 CS012 coding downstream 78646 8095012 ~ 8098533 (+)
CI01000013_08101166_08105054 TMEM5 coding downstream 84800 8101166 ~ 8105214 (+)
CI01000013_08107786_08113703 NA coding downstream 90310 8106676 ~ 8113731 (+)
CI01000013_08139954_08212837 SRGAP1A, SRGAP1 coding downstream 123588 8139954 ~ 8212837 (+)
G82339 NA non-coding upstream 62257 7952768 ~ 7952996 (+)
G82338 NA non-coding upstream 62598 7952441 ~ 7952655 (+)
G82337 NA non-coding upstream 62985 7951851 ~ 7952268 (+)
G82286 NA non-coding upstream 193242 7821700 ~ 7822011 (+)
G82079 NA non-coding upstream 209707 7661091 ~ 7805546 (+)
G82184 NA non-coding downstream 58294 8074660 ~ 8077302 (+)
G82178 NA non-coding downstream 67212 8083578 ~ 8087016 (+)
G82162 NA non-coding downstream 212361 8228727 ~ 8230128 (+)
G82155 NA non-coding downstream 236347 8252713 ~ 8305402 (+)
CI01000013_08652173_08660558 NA non-coding downstream 592658 8652173 ~ 8661156 (+)
G81994 NA other upstream 677014 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 1932886 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 1955757 6049864 ~ 6060269 (+)
G80845 NA other upstream 3179021 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 3949424 4050837 ~ 4065829 (+)
G82168 NA other downstream 11972 8028338 ~ 8041343 (+)
G82581 NA other downstream 1312963 9329329 ~ 9334948 (+)
G84005 NA other downstream 1585245 9601611 ~ 9602235 (+)
G84194 NA other downstream 2014242 10030608 ~ 10036953 (+)
G84215 NA other downstream 2060088 10076454 ~ 10079336 (+)

Expression


Co-expression Network