G303218


Basic Information

Item Value
gene id G303218
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 30569 ~ 51040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU417557
TCCTAGTTTAAGTGATTTCCCACCATGCATGACCATTTCACAATTACAAAAACTACTGTGACAAATTTAGACATCTTGTTTTCCTTAACTCACAGTGAGAAAACACACTAAATTACAGCAGTGGATTAGAGATCTAAATGGTTCTTTTTGCAGGCAGCAGAATTTGCTTTGAAACACTTATCAATAGCTGCTTAAGTattcaaaaaaaacaaaaacaattccagtataaatatttgacattttttctGAAAACCAAGCATCTTTTTCACGTCTATACCTCTTCTTTGGTTGCTGgtttataaataacattttgtcTGGTGTCTTTTTTGATTTTTGAGTACTTTTTCCTCTGTTGATATGCGTATGCGGAGAACCCCAGCAAAGTCATGACGAATAAGGCTCCAAAGGCAATGGCTAATACATCTCCTTTGGACATGTCATCAAACGTTCCACTTGTTTTAACCTTCGGTAAACTCTTTTCCCCAGTAAATGTGTTGGTGTTGGCACTGTCCACACTGGGAGAAGCGCTGAATGAGGCCAGGACTCGTCTTCCATGAAGAAGCTGAGGTGCTCTGAAGTTTTTGGACAGGAGCTGATTTTGACCTGCTTTTAGTGTTTTCTCCAGAGCCGCCAGCTGTCTTCTTGACACTGTAATGGTGTCGTTGAACATGGTCCAGTTGACAGTTTGGAAGCATGGCGGAGTGGTCAGGGACCCGTTGTATCTATAAAACTTCTCCAGATTGTTTGGTAGAAGGTGACGGATGTTAAAACCCGGGATCATTGTGTTAGACTCTTCTATACTAACATCTGTGAGTGCAGACAGGATTTTCTCATAGTTTTCATTCTCATGAAGTCCAATCCCAATAAAGCCTCCTAATACAGCCAATCCATCTTTTTTCCTCGCAGCCTCTGCTAAATCAGCATATTTGGAGTTATAATGAACAACGTGGATcttgaagaaagagagaagatcCGTCATCATAAAGGAATTTTGGGCATTGTATTGTGTATTGCAAATATGGTTAGTGCCACACAGTCTGAAGGTCGATACAGGGAGTGTAAACAAGACCTAATTGAGTGTAAATGAAGAGCAGTGATGGCTCTTCTGTTTTATAGAGTGGAGTGACGTGTTGTGAGAGTGGACATCATAAACAGAGCTGATGGATCTTCTCACCTCGGCAGGGAAGTGAACGTTATCTATGGTGTGCTCTGAGCCGGGGACCTCTATGGTGCCCCAGTGGAAGTGAAGCTGGGCAGCCAGGTAGATTTCATCAAAGCCCTTCAGTATACGCATGCTGCTGGGCAGAGACAGTTGCAACGTGTGTCCATTGTTGTGCAGCTTCAGACCAGGTTGGTCAGTTAGATCGTAACCGTCCAGCTTTATCGCAGGCAGGCTGCGATCATAGATGGCCTTGCTGGTCTCAATATCAATGGGAGACTGAGATTTTCCGTTGCAGTCGTGGTAAGCAGATCTCCATGCTTCTtgatCTTCATATCCCCATCGATGTTCATGAGATGAACTTTTCTCGtgctcatcatcatcatgctcACTGCTGCCGTCTTCCTCAGAGGAAGAGGAGTGAGTTTCTCCAGCCAGCACCTGATCCtggacgaggaggaggaggaggatgaagagtTTTAGTAGCATGCTGATGATGATTCCTGCTGAAGTCTGTCTCCTCTTAGCAGCCAGTAACAGTCCCGCACaggtgctcacacacacactcactatcttacacacttttatatacacacacacaaagcctcACCTCCATTCAATCACAGGGGGAGGGACATTTAAAAGGACCACCCTGAAGAAAAGAACCAATCAGCAGCCAGGAGCTATCTGATCGCTATGTGCCCAGTGTTCCTTTATGCTCTCTCCTTAcagctccctctctctttctctatctgctTCACTCTATcttatatatatcttatatatctctctacatctatttctctctctttcattctctctggtgctctctctctttttttctttcctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417557 True 2015 lncRNA 0.43 11 30569 51040

Neighbor

gene id symbol gene type direction distance location
LOC103030803 aph1a,LOC108427283,LOC100304952,LOC105021718,LOC107670051 coding upstream 5921 7635 ~ 24648 (+)
reep5 reep5,LOC107740782,LOC107715872,LOC108246451 coding downstream 20236 71276 ~ 81191 (+)
pam pam,LOC107577007,LOC107737006 coding downstream 136602 187642 ~ 309508 (+)
ppip5k2 ppip5k2 coding downstream 264942 315982 ~ 359784 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding downstream 315907 366947 ~ 372699 (+)
LOC103024265 NA coding downstream 331015 382055 ~ 383879 (+)
G303221 NA non-coding downstream 8862 59902 ~ 61313 (+)
G303226 chd1 non-coding downstream 34857 85897 ~ 87878 (+)
G303228 chd1 non-coding downstream 39200 90240 ~ 92620 (+)
G303305 NA non-coding downstream 310905 361945 ~ 363425 (+)
G303340 NA non-coding downstream 389382 440422 ~ 446559 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other downstream 314953 365993 ~ 383873 (+)
LOC111191247 NA other downstream 755050 806090 ~ 806546 (+)

Expression


Co-expression Network