G303305


Basic Information

Item Value
gene id G303305
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 361945 ~ 363425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU417687
GGTTACCGGCCGGGGGCTCGGGACTCGGACTCACGGCGAGTAGAGCCTGTAGTATCGGCGGCTCGTCGAATGGTGGGCAGGGGGGGGCAGACTGCAGCCATTACTACCACTACCATTACTACCACATCTCACATCCTACTGCTGGTGTAGCAGCGCTACAGAGAGCAGGACCACCGCGGGGGGCTTAATTAGACTGTACTGGTTTGtgattctgatttattttacagtgatTCTGATTATTGCAATGATTTTGTCTCTTTTGTCTATAGGGTTATAGTGTATAAATATGCTGTGGGTTGCTTACAAAAGGTCTGTAGCAATATAACTAAGTTAGCTAtgtaagctaagctaagatagCTGTAGCTGAAGGCCTGCAAacgagaataaaaaatataaactagtTGGATGACATCATGTCATATATAGACAGATATTATTGTAtctatgtgtttgtgttggCTGGATTAGATTGAcagttaatattaaaatataaatatacagtatattagctATCTGAGCTagctctctgcagtcaggtgcTGTTTCCATCCGCTGTGTCTGACAGGAGGCTCCCAGTGTTGTGGGttagaaagaggaggaggaggagaactgCAGTCTCATCTCTCTACCAGCTTCAGGCTTCAGCTCACTCCAGctaaatgttttatatctgtatattgagctattttatattttatattgagctAATCCAGTGAGTTTATACTCAGCTCAGTTCATTATGTTAACAGCAGCATTATAGGTCTACTGTTGTTATTATCAGCAGGTCCTTGGTGGAGCTACTGGGCCACAGTAGAACATACTGTTCCATAAATGCAGATTTAAGGTGTGTAAAGCCCCAGTCAGGAGCCCTGCTGCAGAATCTGTTTCTACAGCAGCCAAAAGTTCTTAACCCTTAAGAGCTCAGAACCATGTCTAAATATTGATgccaaaatatttcaaaattaaatcagatcaattcagtgagcagctcattcttgtttttttttttttttatcgggcacacaactgtaaatattttaagttcaAAATCACAATGTAACAAATTACACAACAGCaattttataacttttatattttaacattttcatatCTGTATTGACATGAAGTTGCTTTAAAAAACTAGACATCAGGCAggaatgcaccaaaatgaatttttctgttatttttggttgccaaattttggtctattatattttaacattttgtactTAGAAAATAAGGTCAGGACTAGTTATATAAAATGgtaagcatttaaataaaacatttgaattgttaaatggttgtaaCTAATGAGTTATTTTGTTAGTTGACtaatctaatgttttttttttcttagttcaatagtcagtgattatttctgccatgttctccatctttaaaaacaataaaaacagctgaacataatatttaaaatccatttaaaagtctagatgttttttaaacatggaaatGACAGAttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417687 True 1481 lncRNA 0.36 1 361945 363425

Neighbor

gene id symbol gene type direction distance location
ppip5k2 ppip5k2 coding upstream 2161 315982 ~ 359784 (+)
pam pam,LOC107577007,LOC107737006 coding upstream 52437 187642 ~ 309508 (+)
reep5 reep5,LOC107740782,LOC107715872,LOC108246451 coding upstream 280754 71276 ~ 81191 (+)
LOC103030803 aph1a,LOC108427283,LOC100304952,LOC105021718,LOC107670051 coding upstream 337297 7635 ~ 24648 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding downstream 3522 366947 ~ 372699 (+)
LOC103024265 NA coding downstream 18630 382055 ~ 383879 (+)
LOC103024567 LOC108427294,LOC108413448 coding downstream 22078 385503 ~ 389270 (+)
LOC103025635 LOC103025635 coding downstream 32534 395959 ~ 398846 (+)
LOC103031748 NA coding downstream 39042 402467 ~ 404751 (+)
G303228 chd1 non-coding upstream 269325 90240 ~ 92620 (+)
G303226 chd1 non-coding upstream 274067 85897 ~ 87878 (+)
G303221 NA non-coding upstream 300632 59902 ~ 61313 (+)
G303218 NA non-coding upstream 310905 30569 ~ 51040 (+)
G303340 NA non-coding downstream 76997 440422 ~ 446559 (+)
G303341 NA non-coding downstream 80434 443859 ~ 445869 (+)
LOC111191252 NA non-coding downstream 187945 551370 ~ 567446 (+)
G303418 NA non-coding downstream 428927 792352 ~ 795312 (+)
G303413 NA non-coding downstream 442288 805713 ~ 809762 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other downstream 2568 365993 ~ 383873 (+)
LOC111191247 NA other downstream 442665 806090 ~ 806546 (+)

Expression


Co-expression Network