G303340


Basic Information

Item Value
gene id G303340
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 440422 ~ 446559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU417744
cttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaaccagctagcaacaccttagcaaccactaggaaaacgttagaaactgcctagcaacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaaccacgttaaaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacattagcaactgcttagcaaccactttagaaattatagcaactgcctagcaaccacttagcaaccacctggaatacgttagcaactgcctagcaacagcttagcaaccacctagcaacaccttagcaaccacctggaaaacattagcaactgcttagcaaccacttagcaaccacttagcaaccactctagaaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctagcaacaccttagcaaccgcatagcaacaccttagcaac
>TU417748
tatcgtacggttttcgtaaaaacttcgtaaacgtGAGCGTTTTTttcccataggaatgaatgggggaGAATTTTGAACGGCCGTGAAcgtcacaatttttgagatatgAAGACGTAATTCGGCTGGTCTATAAAACTTACCGCGTTCTTTCCGAAAATATGCTTTACGAAACGATACGACGTACGGTTTTCGTACAATTGTCGTACGAAGTTTtcccatagaaatgaatggggggcccagagttccatctcacacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcaccccagccaggtttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacctggaaaatgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417744 True 561 lncRNA 0.45 2 443188 446559
TU417748 False 556 lncRNA 0.47 3 440422 442217

Neighbor

gene id symbol gene type direction distance location
LOC103031748 NA coding upstream 35671 402467 ~ 404751 (+)
LOC103025635 LOC103025635 coding upstream 41576 395959 ~ 398846 (+)
LOC103024567 LOC108427294,LOC108413448 coding upstream 51152 385503 ~ 389270 (+)
LOC103024265 NA coding upstream 56543 382055 ~ 383879 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding upstream 67723 366947 ~ 372699 (+)
trnar-ccu_63 NA coding downstream 446906 893465 ~ 893537 (+)
trnam-cau_91 NA coding downstream 447201 893760 ~ 893831 (+)
trnam-cau_92 NA coding downstream 447403 893962 ~ 894033 (+)
trnam-cau_93 NA coding downstream 447618 894177 ~ 894248 (+)
G303305 NA non-coding upstream 76997 361945 ~ 363425 (+)
G303228 chd1 non-coding upstream 347802 90240 ~ 92620 (+)
G303226 chd1 non-coding upstream 352544 85897 ~ 87878 (+)
G303221 NA non-coding upstream 379109 59902 ~ 61313 (+)
G303218 NA non-coding upstream 389382 30569 ~ 51040 (+)
LOC111191252 NA non-coding downstream 104811 551370 ~ 567446 (+)
G303418 NA non-coding downstream 345793 792352 ~ 795312 (+)
G303413 NA non-coding downstream 359154 805713 ~ 809762 (+)
G303421 NA non-coding downstream 366320 812879 ~ 813722 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other upstream 56549 365993 ~ 383873 (+)
LOC111191247 NA other downstream 359531 806090 ~ 806546 (+)

Expression


Co-expression Network