reep5 (reep5,LOC107740782,LOC107715872,LOC108246451)


Basic Information

Item Value
gene id reep5
gene name reep5,LOC107740782,LOC107715872,LOC108246451
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 71276 ~ 81191 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255303.3
TGACGGtgcatccagcagcagcagggtggaggagagagagagagagagagagagagagaggctgcagTTGGCGAAGTTTTTATTCCACTGCTGAACAAAGGCGATATTTTACACGGTTAAACATGGCGCAGGCTCTGAAAGAGAGATTCGAGAGGTTTCTTTATGAGAAGAATATGATGACGGACGTGTTGGGGAAGATAGAGGCTAAGACCGGGGTCAGCCGCACGTATATCGCCCTGGCTGTCATCGCACTGATTGCCATCTACCTCGTGGTGGGTTATGGCGCTTCTCTGCTGTGCAACCTGATCGGATTCGTCTACCCGGCCTACATATCAATCAAAGCCATCGAAAGCACAGACAAAGACGATGACACAAAATGGCTCACCTATTGGGTTGTGTACGGTGTGTTCAGCGTGGCTGAGTTCTTTGCTGACATCTTCCTGTCCTGGTTCCCATTCTATTACATTGGAAAGtgtgcTTTCCTGGTTTGGTGCATGGCCCCCACTCCCGCTAACGGCTCCATCATGATCTACACGCGCATCATCCGCCCTTTTTTCCTGAGGAACGAGGCCAAGATTGATGATGTAGTGAAGGATATCAAAGGCAAAGCGTCAGATGCTGCAGACAAGATTAGAGATGAGGCCAAGAAAGCCACAGCAAACCTCATATTTGAAGAGAAGAAGACTTACTAATTATCTCTGGGATAGAAACCACTTCAGCTGCTGCGTATCCTGTACGACCTTCACAAGCCTGAAGAAAATGTTGCCTTTggtttttagtgtgtgtgcgtatgcgcgtgtgtatgtgtgtaaacaaCTGGAAAAATGCTCCTtgtttctctcactttttctgtaTGTAAAAACAACGGCAGTGCTGCCAATGCAAAACGAgttagttttaaatatatatatatatatatcacacataATATCAACCGCATGAGAGTGACCATCTACCGCTGTGCTTCAGTCCCAATAAACCAAACTCTGACGTCTTAA

Function

symbol description
reep5 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gonad; hatching gland; nervous system; polster; and trigeminal placode. Orthologous to human REEP5 (receptor accessory protein 5).

NR:

description
receptor expression-enhancing protein 5

GO: NA

KEGG:

id description
K17279 REEP5_6; receptor expression-enhancing protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255303.3 True 998 mRNA 0.46 5 71276 81191

Neighbor

gene id symbol gene type direction distance location
LOC103030803 aph1a,LOC108427283,LOC100304952,LOC105021718,LOC107670051 coding upstream 46628 7635 ~ 24648 (+)
pam pam,LOC107577007,LOC107737006 coding downstream 106451 187642 ~ 309508 (+)
ppip5k2 ppip5k2 coding downstream 234791 315982 ~ 359784 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding downstream 285756 366947 ~ 372699 (+)
LOC103024265 NA coding downstream 300864 382055 ~ 383879 (+)
LOC103024567 LOC108427294,LOC108413448 coding downstream 304312 385503 ~ 389270 (+)
G303221 NA non-coding upstream 9963 59902 ~ 61313 (+)
G303218 NA non-coding upstream 20236 30569 ~ 51040 (+)
G303226 chd1 non-coding downstream 4706 85897 ~ 87878 (+)
G303228 chd1 non-coding downstream 9049 90240 ~ 92620 (+)
G303305 NA non-coding downstream 280754 361945 ~ 363425 (+)
G303340 NA non-coding downstream 359231 440422 ~ 446559 (+)
G303341 NA non-coding downstream 362668 443859 ~ 445869 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other downstream 284802 365993 ~ 383873 (+)
LOC111191247 NA other downstream 724899 806090 ~ 806546 (+)

Expression


Co-expression Network