LOC103024567 (LOC108427294,LOC108413448)


Basic Information

Item Value
gene id LOC103024567
gene name LOC108427294,LOC108413448
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 385503 ~ 389270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255319.3
AGGGATACAAGCTCAAAAAGACACGACACACAGAAGATTCACAGCACTTCTAGAGATCCATTCTCCTCCTGCAGCATGATGAAGATCTGGGTTCTCCTTCTGCTGGTGGCGGCGGCCAGCGCCAAGCGGTTCACAAGATGTGAACTGGCGAGAACCCTGAAAGCAGCTGGAATGTCCGGGTATAAAGGCGTCAGTCTGGCTAACTGGGTTTGCTTGGCCAATGCAGAGTCCAGTTACAACACTCAGACCACAAACCGTAACACTGATGGCTCAACGGACTACGGCATCTTCCAGATCAACAACCGCTGGTGGTGTACCAACGGCCAGTTCCCCAGCCACAACGGCTGCCGCGTCTCCTGCAGCCagCTGCTGTCTGATAACATCTCTGCTAGTATTGCCTGTGCCAAGACCATTGTGAATCAGCAGGGCATCACAGCATGGGTGGGCTGGCGTAACCGCTGTAGGAATCGTGATGTGAGTCAGTACATCGCAGGCTGTGGAGTGTAAATGAACCCAGTGAGATGCAGCTCAAGCTGAAACTGTTGCAGCTCTTCAGACCGTCTTATAACAGGATTTAGTTTTCCCAGAAACTCTTTAATGGCAGTACTGCTATTGCTTTATTATACAATCACCAGTAGTCAGAAAGTATCTCAAATTATACTCCAACATGACCTTAGATTTTGCTAACCCAAAGCTTTTTGCTTGCAAACATTATTGCATatatttttgaaagaaaaatgcTATGAAACGCTGAAGGCACACGCATAAATCAACTGCAAGTTACAATAAAGCATAAACTGACCACTATATGTTGTGTACTGGGTCTTCATCTGTGTCAATAAGCCAAGATTTTGAgagtgtgggg

Function

NR:

description
PREDICTED: lysozyme C-like

GO: NA

KEGG:

id description
K13915 LYZ; lysozyme C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255319.3 True 865 mRNA 0.47 4 385503 389270

Neighbor

gene id symbol gene type direction distance location
LOC103024265 NA coding upstream 1624 382055 ~ 383879 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding upstream 12804 366947 ~ 372699 (+)
ppip5k2 ppip5k2 coding upstream 25719 315982 ~ 359784 (+)
pam pam,LOC107577007,LOC107737006 coding upstream 75995 187642 ~ 309508 (+)
reep5 reep5,LOC107740782,LOC107715872,LOC108246451 coding upstream 304312 71276 ~ 81191 (+)
LOC103025635 LOC103025635 coding downstream 6689 395959 ~ 398846 (+)
LOC103031748 NA coding downstream 13197 402467 ~ 404751 (+)
syk syk coding downstream 43317 432587 ~ 548171 (+)
trnar-ccu_63 NA coding downstream 504195 893465 ~ 893537 (+)
trnam-cau_91 NA coding downstream 504490 893760 ~ 893831 (+)
G303305 NA non-coding upstream 22078 361945 ~ 363425 (+)
G303228 chd1 non-coding upstream 292883 90240 ~ 92620 (+)
G303226 chd1 non-coding upstream 297625 85897 ~ 87878 (+)
G303221 NA non-coding upstream 324190 59902 ~ 61313 (+)
G303218 NA non-coding upstream 334463 30569 ~ 51040 (+)
G303340 NA non-coding downstream 51152 440422 ~ 446559 (+)
G303341 NA non-coding downstream 54589 443859 ~ 445869 (+)
LOC111191252 NA non-coding downstream 162100 551370 ~ 567446 (+)
G303418 NA non-coding downstream 403082 792352 ~ 795312 (+)
G303413 NA non-coding downstream 416443 805713 ~ 809762 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other upstream 1630 365993 ~ 383873 (+)
LOC111191247 NA other downstream 416820 806090 ~ 806546 (+)

Expression


Co-expression Network